At2g14910.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g14910-1-1b68_A.pir.txt

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Assigned types to 386 residues in Sequence 2-14910-1, 5 remain unknown Assigned types to 175 residues in Sequence 1b68_A, 216 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 243 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 244 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 245 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 246 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 247 All residues are positively and negatively charged

Translated sequence file At2g14910-1-1b68_A.pir.txt into sequence alignment.

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>1B68.pdb Made from 1172 ATOM records in 1B68.pdb GQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELK AYKSELEEQLTAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQA MLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY

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Best alignment: 1B68.pdb    18  VQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEE    58 Q LSE + EE L +V+ E +  +     +L + K EL+E 2-14910-1  199  TQNLSETIDEEGL-GRVSSEAQEYILRLQSQLSSVKKELQE   238

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Highlighted IDENTICAL residue GLN  41  index1   19  path  200  %Seq 100.00 Highlighted IDENTICAL residue GLU  45  index1   23  path  204  %Seq 100.00 Highlighted IDENTICAL residue ALA  62  index1   40  path  220  %Seq 100.00 Highlighted IDENTICAL residue THR  67  index1   45  path  225  %Seq 100.00 Highlighted IDENTICAL residue LYS  72  index1   50  path  230  %Seq 100.00 Highlighted IDENTICAL residue LEU  78  index1   56  path  236  %Seq 100.00 Highlighted 6 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g14910-1-1b68_A.pir.txt.1B68.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g14910-1-1b68_A.pir.txt PIR amino_acid 1B68.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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