At2g02970.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g02970-1u6zA.pir.txt

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Assigned types to 555 residues in Sequence 2-02970, 8 remain unknown Assigned types to 313 residues in Sequence 1u6zA, 250 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g02970-1u6zA.pir.txt into sequence alignment.

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>1U6Z.pdb Made from 8205 ATOM records in 1U6Z.pdb EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEA MTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPY PIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL VESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWN VAMGASGTIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLP GLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRH QDVRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEA LLRWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRY HRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLI TDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEESTPEF AAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMT RGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPI EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILVE SRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVA MGASGTIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGL SEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQD VRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALL RWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHR KAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITD DSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEESTPEI

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Best alignment: 1U6Z.pdb  239  LRHRNFASLSL-PGLS   253 R N+ASL L PGLS 2-02970   116  FRGANYASLKLHPGLS   131

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Highlighted IDENTICAL residue HIS 252  index1  241  path  118  %Seq 100.00 Highlighted IDENTICAL residue LEU 260  index1  249  path  126  %Seq 100.00 Highlighted IDENTICAL residue GLY 262  index1  251  path  129  %Seq 100.00 Highlighted IDENTICAL residue LEU 263  index1  252  path  130  %Seq 100.00 Highlighted 4 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g02970-1u6zA.pir.txt.1U6Z.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g02970-1u6zA.pir.txt PIR amino_acid 1U6Z.pdb A 100.0 BLOSUM62.dat

completed successfully.

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