At2g04270.1/MSA

>gi|30678102|ref|NP_850987.1|	  996 residues, 50 /line  glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana] MDVTEV--PWRRLPQ--FSVSSRASWLVSSGFPLSSYMFSHVERGKTF RLTLC--FGVSRLRPRSAIVSAQQEQPPSRLKGLCEVVWIVEAD LAANEHLYVTGDPSTLGSWEPDCAISMYPT-ENDNEWEA-KVKIASGVNFRYNYLLKAGY GSSSDVIWRPGPQFSLSVPSSVNQDRKIIIRDSWMSMSISSKSQESYGWGSWIDDAYLFP NCVTPAQSEDE---CTSADSAIEV--PRTHLNDKQVGAES FLCDELAAFSSENSNLSALFS-DNYQPIEEPWLIQESITLQHERNMQTDSEQDVESCD--

DNENNLNTDEQNHQLTETLL PDGGFFQSESIATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKF VPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAP HEIEHASYDFEASSLLD-IDSND-PGESFHDDDDEHENDEYHVSD-HLAGLVNGTVVNHG A---VEVGSENGH-IPMERGHSADSLDSNASVAKASKVMS --SKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIG-VSKKI -SGVERTRLKVIAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITD---EAK SAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAP DLCNRVELHDKG-IPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVN GGH-GMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEE VKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSK IEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILL KVARHFTRGTFEVKPFMDEKTVNERQHQVA-ISLLKKADAIA---DSSGKKK LTL-IP--

IKKEK-TSGKQRR---

>gi|113460860|ref|YP_718927.1|	  942 residues, 50 /line  ribonuclease E [Haemophilus somnus 129PT]

---MKRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKANIYKGRITRV EPSLEAAFVDYGVERHGFLPLKEIAREYFPDD-Y--

---V YQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI -EGDERLELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQ---AS- -QSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRP DFINRVKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDIN SAR-ST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR MREAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLS ILRLLEEE--ALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHNVDIVV APNEAMETPHFSVFRVREGEEINELSYNLAKLHEMNDET--YVVE---DAFI SRH-LENSAATVESAVENA--AVSLAIET--PAPM-PQER--KQERES LLRRIIEGIKNLF-ADNSSKN--- --KKNKNTRQNK-N-ARHNRRNQDRRSSRRIRQEHEIKSDENNK LD---TQHSHYT--ERYSKH---AKKGVDDP- QIQTKKAGELEIHTKDDETIETIQPRRQRRDLRKKV RVEENLVDTPNLGSTEEHVENEKTTEPV-TS-LEQAV---LQTENEKTHERQ DNNYRHRRLPRHLRVNNQRRRR-NVEL---KSAMPL-FAAVASPELAS GK-VWVDVNVVN-SKNNNFLSVDELLKQQYQQEEIEVVI- PASEILMDTQSDDIKPLSNFVSQP--ANEAVEKKVQETLQR--LTQEVV--- -DESSTIERTEV ---DTNISVP---EFVREYQFNGRLGTISAV---MH T--KAEMTLAKSSDEPMQ---PFSIVEWQDSRYYF-YGRGAAGH HCA-ISHVYSEPANTKI--E >gi|15602856|ref|NP_245928.1|	  1004 residues, 50 /line  Rne [Pasteurella multocida subsp. multocida str. Pm70]

---MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRV EPSLEAAFVDYGAERHGFLPLKEIAREYFPDD-Y--

---V YQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI -EGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQ---AS- -QSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRP DFIHRVKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDIN SSR-ST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR IRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLS ILRLIEEE--ALKENTKQVHTLVPVEIASYLLNEKRRAIHSIEKRHDVDVIV VPNEGMETPHFGVFRVREGEEVHELSYNLVKLHQEKDEH--FVPE---ESLV SRN-IETAALTSENVLESA--AVSMAIPA--PAPV-PEKK--VENKPS LLTRILAKLKAIF-ADKPVVE--- --EKSKGNRPKSNRNRRQQERRNQRRSRAENVERDSNTKR QDEVVEEVIRPRSERN--TKRNRK---ANHAVDTV- SVTENTLDTATVESVEVEKVESVAPRRQRRDLRKKV RISDDVHESA--LPLVETEISMPEAETVVEETVVA-TELVPETVPVVEEGETEKRR DN--NRRRLPRHLRVNNQRRRR-QN---QEF---KAPMPL-FAAVASPELAS GK-VWPDFQPVV-VKENQFLSVDELLEQQHQPKESAATI- PALDLVAEGSEKGVSPFNGFVVQP--ANESVEKKVKQSLQR--LEEEQALAIMQ-- ---PLSVADTKIDEAEGETEHKPLNDVSTELSVKEKDENSLPQSPVEEVVEQ VEMPAQGDEVKSIS---RLQRNYQFSGRLGTISAV---PH T--TSEMTLAKASDEPLE---MCQIGVWTESRYYF-HGKGSAGH HSA-ISHVYAGPTKAENK---G-E >gi|119478177|ref|ZP_01618233.1|	  956 residues, 50 /line  ribonuclease E [marine gamma proteobacterium HTCC2143]

--MP KSSAYSGFVSNMKRMLINATQPEELRVGLVDGQRLYDLDIENRTRVQMKDNIYKGTITRV EPSLEAAFIDFGADRHGFLPLKEISRDYFYRQPS--

---D VQGRFKIRDVVKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRSI -EGEERSDLKDALNNMAIPKGMGAIVRTAAVGRSAEELQWDLDYQAQIWDAIKK---AA- -EDQPAPLLLLQDSNVIIRAIRDYLREDIDQVLIDAEEAYTDAMNFVTRIMP HYESRIRLYQDP-VPLFNRYQIESQIETAFQRDVDLPSGGSIVIDPTEALVSIDIN SAR-AT--KGGNIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMSAAKNQRAVENR MRDALNIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCTGQGTIRDTKSLSLS ILRLVEES--ASKERSAEIRALVPVNVASYLLNEKRQPIHDIELRTGVRVVI APIPQLETPHFELQRLRDDEI--GKDVEISYKMQTEIAD--ET--SIQ-VQQKAAA PQQAAVQSIAP-PAP--APLAAAKAN-IAPD--TATKSPG LLSKIIGFFTGGD-KDDEKKDEQK ---KP-EKRESTNRRP---QNRGGQQNNN--- RNRNRNRNKSRNESRNESNDRNEGNDRGTKDGNRNA APQQKKTHDKVEPREAP-AANESHEDKPQRRPSNRRPRSSQR-RR--- --NRGPNTENNEIENTSNE--LPKTPEAVNNGQDLQQ---LEP- -AIDHPVVAPIAAVSEVAEVSEVSAV-AEVAEVAQVAEVAEVSE VVEVAEVAEVTEISEVAEV--AEVIVAPVTEVELIVESTPETVIVDQQ ETPASDEILEPDT--TAEAPSVDNAVVETEMEPLEAAIANTA---SSA IAEPP--VEEEAVVTDNAANTALTEAPTESGTAEAS -PTSAEAPVGRASNDPRLTPKTIDAV-EIETEHLDTIPKA PAAAAEPDS---EKAAPSRAPNDP-RHK ---R >gi|90415858|ref|ZP_01223791.1|	  1008 residues, 50 /line  ribonuclease E [marine gamma proteobacterium HTCC2207]

---MKRMLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRV EPSLEAAFVDYGADRHGFLPLKEISREYFKGKSS--

DGGRVNIKDAIREGQEIFVQVEKEERGSKGAALTTFISLAGRYLVLMPNNPRAGGISRRI -EGEERADLREAMRGLDIPEGMGAIVRTAGIGRATEELQWDLDYLLQLWNTIEA---EA- -EGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLAAAFIGTVMP DFTNKVKFYQEQ-IPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMVSIDIN SAR-AT--KGGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVENT IREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRSLALS ILRLIEEE--AQKEFSKEIRAIVPVSVATFLLNEKRSEIADIESRNKINVVV LPNTQMETPHFEVVRIRAQDDD-DSDGEFSYKLAHELSS--KE--PEQ-DLERTSA PL-PISEPAVKTLVP-HKP--APIMPEKAA-PTAAAAVKTEKPG LLKRIWESIFGGS-STEAKKTEDE ---KKTRPRGSNSRRGGQNQDSRNRQGNR--- RPNNRNRNRNRNEGRNDSNRDAEGTETQAK--SADKQGQGRGRN--DQSRPA AKQDTREQKVDSASTATQTAD-KGPETGEGGELKKRPNDKRRGPRR-RR--- --QRQD-VPANVTEQLSADIAVETSTVAADSSPSVES---KTA- -APETAAQVTTDTTAEATETKPARKRPARRRKPKADVVETGETAETGS TEATPTAPVVADTQDSAAA--PEEKPAPKPRALRKAPAKPKKVEADAS SSAAASEATAAPE--KAEAPQSTEAEAP-KPT--EAEAPKPTEAEAPKPTKA DAPKP--AEKPKAPKKAAAVVEVIEKAAPKAEAKAT -AKPARAATARASNDPRFKPKPVSDV-KVSTARVEKPAAV ALDTSKPAPTAAPKAPVARASNDP-RKNRASQATKADSAP --SDTGSAKESTEKGPQ--A >gi|119503336|ref|ZP_01625420.1|	  973 residues, 50 /line  DNA polymerase III delta prime subunit [marine gamma proteobacterium HTCC2080]

---MKKMLINATQPEEIRVAIVDGQRLNDLDIENRSRGSTKANVYKAKITRV EPSLEAAFVDFGAERHGFLPLKEIAHQYYRSTAP--

---E GEGKTRIKDVLKEGTEVIVQVDKEERGTKGAALTTYISLAGRYMVLMPNNPKAGGISRRI -EGDDRTELRDALSQLNIPDGMGVIIRTAGVGRSPEELQWDLDYLLQLWSSISS---AS- -DENKAPVLLYQESDVIIRSIRDYLRDDVDQVLIDDKAAWQQAHDFVTMVMP KYAQRIRYYEDA-TPLFNRFQVEGQIESAFQREVRLPSGGSIVIDPTEALISIDIN SAR-AT--KGSDIEQTALQTNLEAADEVARQLRLRDMGGLVVIDFIDMNANKNQRAVENR IRDALEVDRARVQVGRISRFGLLEMSRQRLRPSLGEISAMVCPRCTGKGTIRDTKSLALA ILRLLQEE--AAKDRTGEVRAVVPVEVAAFLLNEKRSAVNDIESSSGVRVLI IPNPHMETPHFDVIRLRDDEVE--ESTTLSYEVAIETP--DPI--AVR-DEV--SA IP-AAPQPLVRGVTP-QEP--APVAAEPEA-PAPMAETRDIKQQP--KTESPQKTG ILTRMWGALFAPAPSEEADI ---ETLTETEDSGHEESSEPK--- ENANRQRR--SRGGRNRTRSRRPDSDVQAE--DTD---E- ---VDQTTVDADESDSS-ESNDDTDDRPKRNRRRRGRRGG --QKRPLSDSSDVEANEGE--EHTGEDDIDDAVDNDV---QAAVAEE- -SKESARHRPSDKRSEGRRRRQRGPKPDIQAETQADTAGTVTDAPVAG TDENDAPIENAVSAEANQV--PAPALSSVTDQIDLLAGTPEGAKQTEE PMVAASSVT-AQE--TDEANVTDEANVN-DDTAQSTQTAESEPAPVTDAVAATSEEI--A SKEET--VKPEEIIATAATIAPATAEVD --RSGLTDAGRAVNDPRVEPKPIGEV-NVATLRQALFLEQ EAPPVS-IVSRDIPRASNDP-RGPKAGLA---FTAAKRSPDESN-EDTV--- ---PDAQ---AN >gi|119897904|ref|YP_933117.1|	  1014 residues, 50 /line  probable ribonuclease E [Azoarcus sp. BH72]

---MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRI EPSLEAAFVDYGAERHGFLPFKEISRSYFQPG-V--

---D -AGKASIKEALREGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMPNNPRGGGVSRRV -EGDERAELRDVMDQLEVPGGMSLIARTAAIGRSAEELQWDLNYLLQLWTAIEG---AA- -TSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDIYEQARQFMAHVMP GNVNRVKRYQDD-VPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSIDVN SGR-AT--KGADIEETAFRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVENR LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALH IVRILEEE--AMKENTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLII VPNRHLETPQHEIIRLRHDQLNLEDIALASYQMVQKPAD-EEM--RLP-TKN--GD KP-ARQEAAVKGISP-EQP--APIVEARAE-AAPAPAAVA--PAPRRG LLDWILGLFRSEP-APAATPAPA- ---ETPAKREARPRGERNGDA--- RRGNGNRN--RREGQRERTERDGETPRARP--ENGRHARG--E- ---RSESVEREKPQQER-AERPERADRPERTERGEGGRGRGR-GQ--- -RQARTDELNEKPADKAAE--VAAEVIAAA-ALASAN---DTEAVVP- -SGDDS--AGENAAPEKRRRRGRGRRDRRPAEVAGVDGVTENEGSADA-VAE TADVLAPEAAPVVAEAEAV--VQVAATVEAVEAPAVEAPAVEAPAVEA PAVEDAPAA-AEA--APASAELPVVASA-ATAVESIV--EAAPLPVAIETAVPTEEVAGA HVTET--VAPETVPPLCVAEPPAADHPEVSVEAEAV -ATTLETATVQPVAAPEAEPV-AEA-PALVVAAEDS IVPPAP-TETRAAGVEQKPAPSDPIDLGPALADSGLV---LIETSRDKLSKF-GTGAVEQ S-VPLGRKPRQAMVIAEEPLQQVETR-K >gi|56478531|ref|YP_160120.1|	  1007 residues, 50 /line  ribonuclease E (RNase E) [Azoarcus sp. EbN1]

---MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRI EPSLEAAFVDYGGERHGFLPFKEISRTYFAPG-A--

---D -AGKVRIQEALKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMPNNPRGGGVSRRV -EGDERTELRDVMDQLEIPSGMSLIARTAAIGRNAEELQWDLNYLLQLWRAIDG---AA- -QSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDVYEQARQFMSHVMP ANVNRVKRYSDD-VPLFSRFQIEHQIESAYSRQVTLPSGGAVVIDHTEALVSIDVN SGR-ST--KGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVEGL LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALH ILRILEEE--AMKENTGAVHLQVPVDVATFLLNEKRVDIAHIEVRHKIQLII IPNRHLETPHHEIIRLRHDQLNQEEVALASYQMVGKPAE-IDL--RLP-SKE--DT KP-PRAEAVVKGISP-AQP--APIVEPKTE---PVVAPGL--APKPAG LFQRLFGWLRSEK--PAVTPQMAP ---EIAPKPESRPRAERSDTR--- RGNNRNRR--DGQQRTERGERDESTSA-AQ--TARGPVRG--E- ---RAERPERSERTERS-DTGVDRGDRPARPERDNGGRTRQG-RG--- -QRTQPKQGEAAVVDNVVE--SPASTITIAPAPLAQM---EAAAIVP- -AAEDG--T-PEKRRRRSRGRRDRRGTEQQAEVAASGDE-TGDT-WAE TA-VPSIETAPETTQATSA--EPVAEVAAELPLAAAETTAPLPVAVTS P--ESIAVT-AEA--APLPVSLHP-ATSIEAES--PAEAEPVTLETAAEPVAEREA AIEPA--LEAKIAPEAAIEAAERARESLQAGLMEPLVHADTEPV -QVSAGEELVEAEAEAEAEQAPTAA-PAQNVVAPET EVAVTE-AEVRTA---ESRLSSAPIDLGVNLAESGLV---MIETSRDKVQEL-ASTADET PARPLGRRPRPAPVIVNEPLQQVETHSK >gi|88705137|ref|ZP_01102849.1|	  1003 residues, 50 /line  ribonuclease E [gamma proteobacterium KT 71]

---MKKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRV EPSLEAAFVDFGAERHGFLSVKEIAREYFYRNPK--

---D VDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTFISLPGRYMVLMPNNPRAGGISRRI -EGDDRAELREALSALDIPDGMGVIIRTAGVGRSAEELQWDLNYLLQLWEAVSK---AG- -EENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQAMDFVSMVMP KYQQRIKLYEDN-IPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDIN SAR-AT--KGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAVENR MRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKSLSLS ILRLLEEE--AIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVESLTRVRVLV IPNPNLETPHFEVTRLRDDEVEG--DQQTSYKVEIAVPD--AD--SIS-DSH--DH SL-PTQEAVVQRIAPTAAP--APTAVADSEATEPASVSGAATSAATTAVAATAAVAAKPG LAQRLWVSFFGDP-NANAEEAGAE ---EAGAVTTSDSNTSESADAEGDR--- PKRTRGRRRRGGQGRNQNRNAEDTDQNA DSK---DSEASTDAAEARTGS-ASDEDGSEKPEDGTRRRRRRRS-R-GG--- -RRSGPDGQESTGESGVTQ-SEDSSDSDEAAAVASED---DNGESSDRDQDV ASEHKPRKRPSNQRRGEPRRRR-RKPVTETA-EAVA EEQTDQASTSVVESEAESS--VEPVEAIEAV--TEVEAVAETASVVDE SAVDASLND-AEA--SNSVAAADEALTG-EAATAT-DTVEAAETPVAEEATKPASAGSSI EAAMGLSAATDGQTA---IVEAEDSPEAVDDVSEVVADATADTAQAPAPAEPAAAT LQVDAKAANA---PGEGLTEEGRAVNDPRVSPSPVQEL-HIETGQIVLFSET AAPAVEA-PDRQVPRASNDP-RGPKDAVS---AE-- ---A >gi|83644954|ref|YP_433389.1|	  1056 residues, 50 /line  Ribonucleases G and E [Hahella chejuensis KCTC 2396]

---MKRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRI EPSLEAAFVDFGAERHGFLPLKEISREYFKSQPQ--

KGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRI -EGDDRDQLKDAMSGLTVPKDMGLIIRTAGVGRSSKELQRDLDYLLQFWDSIRH---AS- -DSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDALNFVKAVMP NFENRIKLYQDD-IPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDIN SAR-AT--KGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVENR LKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLALS VMRLIEEE--AFKERTAEVRAICPISVATYLLNEKRENLAKTQKRHGVKVIV VPNSHMDTPHFEVQRIRDDNANV---SEISYNVRPEMEE--KN--PVE-SLL--HK EV-VRQEAAVKTIVPSSTP--TP---PSEEVG LLKRLRQKVSKMF-SGEKKDSDLKI-TVA--- ---ESPQTSQDKDAGRRKVKVRDRQDGQRDNQRQGDSRQAESRDGGQDN--- RRGNRGRNDDRNQRRNERNDGQKDRRQRDRDSSKGD SQRDQRGRNESAKADSG-SQEKSEFNRPRRDRSSGKPVPRPQ-RQDRP ERQDKPEDQEKAVEEVAERRALTAAAASAAEEPAKSEIAKE---VWNKSVEAIAES ESTDNTRQAPPKAEEKGVEPAQQTAKQPHQPSEQSKAPQERASEQSAKQSDADSRQRKQD DAEANQQNAGEDGQEKSAR--RARADNDPRNKARRPKREAAEAKSEEA PKESQLERSVAQA--KANAPAMGNTSVESKNKEDKKEG-- RAAKASAIEQPKKEA---TPEAKDKPDTAPATDK--GATKAAPEPTVEK--- KPSDKPAATAAQEEEEPKRAFNDPREVRKRIQAQ-KVQAGNDASSALA PQQIAAPKPPEAATIEPKMEAKEPEPKKAP--AAEKPREEVEPP-KSAPSAP EATVADVKAEDKPSSQDSKASQ-A >gi|90021266|ref|YP_527093.1|	  968 residues, 50 /line  DNA polymerase III delta prime subunit [Saccharophagus degradans 2-40]

---MKRMLINATQPEELRVALVDGQWLYDLDIENRLREQKKANIYKGRITRV EPSLEAAFVDYGSERHGFLPLKEISREYFAKQPK--

---D IDGRIRIQDVVKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRI -DGDDRTELKDALSQIDVPAGMGIIVRTAGVGRRAEELQWDMNYLAQLWASIKT---AA- -EEKTAPEFLFQESNVIIRAIRDYLRPDIGEVIVDNQDAYNLATAFVEQVMP NYRSKVKLYEEP-LPLFNRFQIESQIETAFEREVKLPSGGSIVIDVTEALISIDIN SSR-AT--KGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQREVENR MRDALEMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSIALS ILRLVEEE--AQKERSAEIRAVVPVAVATYLLNEKRKVISGIEERQKTRIVI IPSEKMTTPHFDVQRLRDDDVVS---SEISYKIEVPQGE-DEE--KIQ-DDA--AA LA-KLPRPAVQAIPP-AQP--APEA--PKPDS LLTKILKKLKELF-KTDDKKR--- -KNTSKNSRGQQRRRG---NNSQNN--- RNRNRNRNGRGNDNRNKNRDDEITDNLS --SRTKSDQSQQG-QGPSSDDNRPDRGNRKRGNRRRNNNRRNDQ DRNDSPESNND--EQQNNNQPQEQN-NA PKEQGPNRRPNGRRGRGGRERK-REPVPQAAEESVTKDDSALAAEVTS AIDTAE-KAFATNSPAELK--QAKSEAKEQAKSEAKEQAKSEAKE--QAKQE RAPQEAAIT-AET--PSEAKQPEATATAAEAKPEPSEKAKASQAPQAAEASDTTETVAET KVEAPSAEAAPAKEA---PVETAAETASEAETAEPVAAAETAEVAEVAVAEATEEA SEAKEELAPAQAVRKQYSRATNDPRATPKPVANT-LVSNVVTQIRMSR PLDTTQPANILRNPRDLSRPANDP-RLKRN-- ---IEEVASD-A >gi|146306650|ref|YP_001187115.1|	  1012 residues, 50 /line  ribonuclease, Rne/Rng family [Pseudomonas mendocina ymp]

---MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRV EPSLEAAFVDFGSERHGFLPLKEISREYFSK--A--

---P EGGRINIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRI -EGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKE---AS- -TSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMP QYASKIKLYEDS-VPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDIN SAR-AT--KGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEK VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLA ILRLIEEE--ALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVI LPNDHLETPHFEVQRLRDDSPEA-LSGQTSYEIAATAENEEAAA-HPAAATR TL-VRQEAAIKA--APRSS--APVAAEPQ--PAPL-TPTK---APEPS LFKGLVKSLVSLF-AGKEEEAQPA ---VT-EKKNNERPPR-EERRNGRQQSRNRGGRRDDERKPREER APREERQARE--PREERQPREERAPREERAPREPRE-GQENRRERKPR EERAPR-EERVRELREPLDTA--GNEQREERAE-RQPRAERQERQRPP REERQPRA--EQAEALQDEALPNEEQL--QDDEQDN NDGERPRRRSRGQRRRSNRRER-QR-DADGNL-IESAENSEAA- GNDAQAVTPVAVAT--AAAVVAESVDSSENVASEAPASEA PAIEAPSVQVEEA--PAAQPV--EAQAEAAVSEVVEAA--PITEKAVEAEPA AVETPAAVEALVAEPVAQAE---PTVEV AQEPAPAPVEQ--APAAAAVPANATGRAPNDPREVRRRQREAERLAREAAEAAAAA P--AVEAAPAVEASAPAEAEAAVVETAPAAEPVTEAQADPI---ASEQEAGE AVE-PAQPEAEPQDDKEEVKPQ-V >gi|117619748|ref|YP_856763.1|	  1039 residues, 50 /line  ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966]

---MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRV EPSLEAAFVDYGAERHGFLPLKEIARNYFPSG-Y--

---S YQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRI -EGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHK---AS- -QSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRP DFLNRVKLYKGE-VALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDIN SSR-AT--KGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR LREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALS ILRLIEEE--AMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYI IPNQHLETPHYEVTRIRQNEIPEAASYELKT--EIAKPV--YQPK---QAQV I--EREQPLLQGFVQAPQPAPAAPA--PVVA-PAAP--AAPEAG LFGKLFKAISGLF-GSDTAPADVK--APA--- ---DKPAAQREARKDE--GHRHQRDETRSRGQRGRRDDNRGNRSPADA AEKREA-GANREGGESRNRRPRKEREPRQEREARGEVREQRMEREPRE-AREPRQEREPR APRPAREPRASREPRAEVVVDAVETVDTTMVNDEPRLEKEQKVAERRERRQLRKQI RVDAPASDVAALPADAPVVATEDASDSV-EQHDEQA EGQRRSRRTPRNQRIEGQRRKR-IN---EDARSQREDEEQSAEGATPT-LTAAAQADAAQ VK-VEEPAVPVITIPSAEAVAAALQ--ASAALTEHVVPEA VVAEAHEQAEVVAAEPVVTEAVVAAVVAEEAQVA-- VVNEPVVAEVAAPVAA---EVVAVEAPAIE---TAVVEAAPAAPAVEE AAPAVVEQPAPVAEPVIADEASVATAVAAPVAK-QVKRGG-GLLAGA---RK A--SAPMATPAAAPALPV---REPVDHAPLVRSEV-ASSGRHGG STA-AVNVATSPAGRP >gi|120554794|ref|YP_959145.1|	  1056 residues, 50 /line  ribonuclease, Rne/Rng family [Marinobacter aquaeolei VT8]

---MKRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRV EPSLEAAFVDFGAERHGFLPLKEISKEYFKKSPG--

---Q IEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRI -EGDDRAQLKEAMNGVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQ---AA- -GERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYEDVLSFVRAVMP TFENKIKLYKDE-IPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDIN SSR-AT--KGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQK MREALELDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALS IMRLIYEE--SSKEKTAEVRAMVPVSVATFLLNEKRKQLADIEARQGVAVVV APVPNMETPHFEILRLRQDETSP--EHVSSHQVAQQYSEREEEAAVEVA-SA EKPVREQAAVKAIRP--SAPA--PAPTA---AA---PTAA--AEQEEG LFRKLGKKIACFF-RGEEPEQEASHDTNR--- ---N--RSE--ERRNQARQDRRKSRVARDDQRTGGNRSGS DRRQGSQQNRGDDNRGRNRGGRGDDQNRG--ERGGQNRSNRDDRSGDSKGNDNRRDNRK- --DSQGRGQNRNRPQRDQKGPQDNREQQESQKGPSNDKQGGDDKQRKPRRQRNRDG SPAETPASTPA---ERKAERSEKHQKDTQPEKAADKTAPVDAKASEPRVDKAEQPA ATTPETKTAPESRKPEQQEMAE-KPETKTEQAEQKEAPSAEDKPEAKDESSR KEKSDGRRGRS---SGRQRKPRSADS-A EKSGAAEDKGDKESLPAEAEQK--QAAKPQRTEQVTATEA-E-QPAEKASAEPAKAEDKE PVKAEAKAPRQAKADSPKASEPETGAASDQKAAEDKADKAPEQKAEAAKTEPEVDT APEKQAGSSSEKPADKPEQPAEPVKAEPAPASEKPAEQKEETQEASAS E--AIPVTPGRAYN--DPREVRKR QRA-AEEAKKAEEAKQAG---S-N >gi|59712355|ref|YP_205131.1|	  994 residues, 50 /line  ribonuclease E [Vibrio fischeri ES114]

---MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRI EPSLEAAFVDYGADRHGFLPLKEIAKEYFPQG-Y--

---T YQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI -EGEERTQLKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAVKH---AS- -ESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRP DFLSRVKLYEGE-VPLFSHYQIESQIESAFEREVRLPSGGSIVIDPTEALTSIDIN SAR-AT--KGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENR MREAVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALS VLRLIEEE--SLKDNTTQVLAVVPVSIASYLLNEKRRSVQHIEKFHDVRVII VPNSDMETPHFEVIRIRDGEEQEMLSYLLPKKLEALREA--ESKEAPVVNIA PKK-REEPVLQGFSAPTQAA---PVAKAQ--PEKK-AEAK--TEEKPG IISRFFKAIANFF-SAPEVSEKTEKKVEE--- ---EKPAQP-QRRNQNRNND--RRRNNENGRNNRNNRRNGNDNRNENRRGKK QDDANATTGK--QAKANDNKP--TK--- --QPKVRKEIAEQGLKLAADAQQAP-AQNTEKQTEKREKTAQVKQRRQRRQLQKKV RTGKAVEA---ENDAVVAAQVEAQQSN-TEVNTEKNTERK EGQRRNRRSPRHLRASGQRRRR-RD---RRP---VNPSRL-SSGVASPEMAM GK-AYPDFARILEMKQAKQRQQEKFVDNETQAAQDKA--- PKVNVQI-GGVAFPEMAMGKVLLP--YVEASVATIKEAVQAP-VVEEVKETTPA-PVEVA VTEAPTATPVV--NVVAETPVEPAVAEVNEVAVAEAAVKPVVEV EEVQPVVETKVAPKTQYKGH A--SSGMTKATGPTEIKE---ITVTA--AEFRAER-FTPKQAGS QTA-TSQASAAMAKTAA--L >gi|75428521|ref|ZP_00731723.1|	  962 residues, 50 /line  ribonucleases G and E [Actinobacillus succinogenes 130Z]

---MKRMLINATQKEELRVALVDGQHLFDLDIESPGHEQKKANIYKGRITRV EPSLEAAFVDYGAERHGFLPLKEIAREYFPAD-Y--

---V YNGRPNIKDVIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI -EGDERIELKEALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQ---VS- -ENRPAPFLIHQESDVIVRAIRDYLRRDIGEILVDSPKIYEKAKAHIKLVRP DFINRIKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALIAIDIN SAR-ST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENR MREAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSSHICPRCQGTGKVRDNESLSLS ILRLIEEE--ALKENSKQVQCIVPVQIASYLLNEKRKAIRSIEKRHNVDIVV APNEAMETPHFSVFRLRDGEEANVLSYHLPKLHEVQEDV--FVAE---ESLI SRN-IETAAVTAENMAESA--VLSMTIPE--AAPV-IEAK--KEAESS LFARIVAAIKKLF-TTAPEAEKVEE--- QPVVTRNNRNNR-R-ERNNERNNERRNSRRSRAERNTARNND-- --TAAEKPETPSRNERSNERNNRRN--ARRAALTD- --ETSANAGTAEAVETSEEKSPAPRQPRERRERRDLRKKV RVSNET--VEQQ---AVEEVSAVAEETVTEQPSSESPRRE RSERNSRRMPRHLRTNNSRRRR-NE-VSSMPL-FAAVASPELAS GK-VWIDSNTTSQK---TKESNFLSVDELLEQQTQNDEVEVST- PASSI-VEKAENNAQPL-GLVSQP--ANEAVEKKVQESLER--LNEEQRVLEQQ-- ---AKASSVAEAAVE-KENVIPEKKVNE -PEISVKNGQ---KFDRTYRFNGRLGTISAV---RH T--KADMTLAKADNEVNV---PFDIVEWKDSRYYF-HGKGSAGH HSA-ISHVFSEPTKAEAK-- >gi|71282108|ref|YP_269009.1|	  1004 residues, 50 /line  ribonuclease E [Colwellia psychrerythraea 34H]

---MKRMLINATQSEELRVALVDGQKLYDLDIESPGHEQKKSNIYKAKITRI EPSLEAAFVDYGADRHGFLPMKEIAREYFPKG-Y--

---T FQGRPNIKEVLHEGQEVIVQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRI -EGDERTELKASLSKLDLPKGMGLIVRTAGVGKDYEELKWDLSVLLHHWQAISD---AG- -KSRPAPFLIHQETNLILRAIRDYLRRDIGEVLIDRPKTFESVKKHIEVVRP DFLNKIKLYTSD-VPLFTHYQIETQIETAFQREVRLPSGGSIVIDPTEAMTSIDIN SAR-AT--KGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENR MRDSVHQDRARIQLGKISRFGLLEMSRQRLRPSIGETSQGVCPRCSGTGHVRGVESLALS ILRLMEEE--AIKENTLHVQAQVPVPVATYLLNEKRRSVMHVEKHHNVRVLI IPNPHMDTPQYEVLRVKNDETIVEASYELPVKKAELEEA--KMPK---FDKV AAK-RDEPLIQGMTSPTRAPK--ADESPV--KAEI-TTVS--KQTKPS ---GFFGWLKSLF-VAEEVVE---EVKEV--- STT---QQPKKPQERR-G-NQQAKRRNNRGNNRNRNDRNGE--- -DATNRPIQKEN--EARDTR---PSRDEEVN- KPKRQPRKTIAVDKEKVVKEEKNTERRQRRNNRKKI RVTPTDKVIETTEK-LAVVSTPEIEQVNTPAVE---NVEVVATN DDKPRNRRSPRHLRANGQRRRR-NN---AEN---NSEATQQDQALTTENITT DESVEARYPATSV-TEQEVVVTSTEEVAVETIAAAPVETKAVET EAVETVIDVPLNDTKELDTTKTEEEVSTADVAEQVTEVQQE--LPLEQKQDVVVTTE--- --ESPEVKEANAAAPVETDVTSPAI---ETVKQETVNDTAPVAKSVEV AETVIATQEDKVVAPKPAKKASSAVKKAAPKDKKLARQVKKANRLSGH A--KAPMTKTETITTIKD---IPTNF-MADSERHV---HQSSGR TAI-IADVVNRSSAQATK-P >gi|90407029|ref|ZP_01215219.1|	  984 residues, 50 /line  ribonuclease E [Psychromonas sp. CNPT3]

---MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRV EPSLEAAFVDYGADRHGFLPLKEISRNYFPNG-Y--

---S FKGRPNIKEVIKEGQEVIIQIEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI -EGDERTQLKEALSHLKLPNGMGLIVRTAGVGKTAEELEWDLNVLVNHWHAIDE---AS- -KSKSAPFLIHRESNVIVRSIRDYLRRDIGEIVIDHAKTFEQAKKHIEMVRP DYIDRLKLYQGE-IPLFTYYQVESQIESAFQREVRLPSGGSIVIDPTEALTSIDIN SAR-AT--RGGDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPARHQREVENR MRESVRQDRARIQLGRISRFGLMEMSRQRIRPSLGESASRVCPRCHGQGTIRDNESLALA ILRLIEEE--GLKENTVQIQATVPVAVAAYLLNEKRSSIFKIEQRHNCEIFI IPDANLLTPHFEIKRTRNDNQTEINYDALQKQHQVYVPN--VVKNEQQ --K-EDEPILSGFSRPKNSPKQKHKNSTE--KAVQ-STQS--TEKPTS LLSKIFASIGALF-SASPETAEP--KVEE--- KPR---PRNNNNRNRN--RNRNTRTRNKNDNERSN- -DDVQKPSEENN--SRRVQK---PRDND RIKKAPRKPQA---PIEAIE--QDGVVAVRRKRRNLRKKV RIQQEPVITPEVENVAVIIETEASQQTAT-E-NVTIESSVNTAPD---LTEQ NGVKMPNRRSRYLRNNGQRKKR-SI---SEA---IPGNISDESALTTDPV-- SSRYPDNQTEAALNVAAPVATDISTLDDHVTMAQDVEEMRND-ETPT- QAPQILPDVN---VTP--EVVAVPEAVVAAPEV--VVAPEVVAAPEVVAAPE VVATPEVVAAPAVVATPEVVATPEVVAAPEV---VAASEVVATPEVVATPE--VVA TPEVVAA---PEVAVITKKRIGTTSS--AKKS V--TAQMKKTVSSELDLS---APLKIEAATTRISIAKSTQQAGS QFA-SAKASSVTVKAV---L >gi|52425677|ref|YP_088814.1|	  960 residues, 50 /line  CafA protein [Mannheimia succiniciproducens MBEL55E]

---MKRMLINATQQEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRV EPSLEAAFVDYGAERHGFLPLKEIAREYFPDD-Y--

---V YQGRPNIKDIIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI -EGDERLELKDALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQ---AS- -QSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRP DFISRIKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDIN SAR-ST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR MREAVRQDRARIQISRISRFGLLEMSRQRISPSLGESSHHICPRCQGTGKVRDNESLSLS ILRLLEEE--ALKENTKQVHTVVPVNIASYLLNEKRKAIHDIEKRHNVEILV VPNKEMETPHFSVFRVRDGEEINTLSYNLVKVYEEQETT--FIAD---EPFT TRV-TETAAVTTENVLESA--ALSMTISE--PAPT-IEVK--KEEQPS LFVRIVAAIKGLF-ASEPKVE---EKVEE--- APQ---PNTRNRRNNQ-E-HRNSRRNRNERNNRGNNEEPADKVQSE-- --KSAEKAERPARSER--TRRNNR---NRNAAAD-- --DSLNNESVIEAV-TNETTDDEAKAPQQRRQRRDLRKRV RVTEEQVTVA--AEPVDKPSLAESVPV-EPVVEENVYQER DRQDNRRRLPRHLRVNNQRRRR-NAEQ---VSAMPL-FAAVASPELAS GK-VWIESPTAPAK---PKESAFLSVDELLEQQSEVKQPGVT--TPA- PATQVIFDKADNDIAPLASFVTQP--ANESVQKKVQESLDR--LEQTNGQQTEVKEDDNA SN--MTLSDVTA TESAVEKTEVLNLS---NYRFSGRLGTISAV---KH T--KAEMTLAKAADEVLP---PFEIVQWQDSRYYF-HGKGSAGH NSA-VSHVFTAATQAKAE-- >gi|68249015|ref|YP_248127.1|	  951 residues, 50 /line  ribonuclease E [Haemophilus influenzae 86-028NP]

---MRFIL RFFKYLIRELTMKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRV EPSLEAAFVDYGAERHGFLPLKEIAREYFPDD-Y--

---V FQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRI -EGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQ---AS- -QSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRP DFINRVKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDIN SAR-ST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENR IRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLS ILRLLEEE--ALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIV APNEAMETPHFSVFRLRDGEEVNELSYNLAKIHCAQDENTE---ESLL SRN-VETTAVIEQPAVESA--VVALSISE--AAPT-PVER--KSNEPS LLAKIIAKIKGLF-ATKSEE --NKPKNNRTSR-NPNRNQRRSQDRRSSRRPRSENNETER TE---EQVRNVR--ERNQRR---PRRNLVEE- SIAESAVNSTPVFEAKEERTEPVTQRRQRRDLRKRV RVEDNETVVENN---FSTTEKMPEVDVI-TV-QNNDEKPVHQ--NQRS ERQERQRRTPRHLRAANNQRRR-RN---QEP---KSPMPL-FAAVVSPELAS GK-AWIDYSTVNLPKENHFLSVDELLEQEKTKKGFIT--- PAMGIVVEEKSPDVKPALDFITQP--ANESVQKKVQESLDR--LSS---YKPQEVVESI- ---DPAINVDEP ---ETLEKVS---KFVRTYEFNGRLGTISSV---PH T--KAEMTLAKANDEMPE---AFPIRAWQDSRYYF-YGKGAAGH HCA-ISHVYSEPTRAKSE-- >gi|46143575|ref|ZP_00134935.2|	  992 residues, 50 /line  COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae serovar 1 str. 4074]

--MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRV EPSLEAAFVDYGAERHGFLPLKEISREYFPAD-Y--

---V FNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI -EGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKK---AA- -ESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRP DFINRVRLYEGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDIN SSR-ST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR IREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALS ILRLLEEE--AIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVV VPTESMETPHFSVYRLRENEVLPTLSYDLAKHYHDREEDTQLNTHTVSE---EVLV TRN---EPVITVESVLQSS--ELNL-QPA--PTPV---EPAKPS LLSRLIAKVKSFF-APEEKAE--- --EKPKPKARNQ-R-DRRNRRERPNRADRQERKQTQT--- --QDEQKAQRQERNQE--RNEAKK---ARRQVVEE- --V--AGVQ-E---TQTEQRSNKDNATTERRQRRDLRKKV RVENVETSIVTTEPITQPIEEKVQNIAQIQPL-VA-QETQPETVNEERQDVR E-NGRQRRLPRHLRVGNQRRRD-NN---NRKENVVAAMPL-AAAVASPEMAS GK-IWVKFSEPVSTNKPNSKAEEKARFLSVDEMLEQQTTE--VNEPI- VESNIE-NNSASSVAPVVGFIKQQ--SDRDLVKENKARLHH--QVEESEQADEQ-- ---LVEKAMAKHVAPLGGFVSQHSDRDLVKEKNERVQKFQAQATQVPA IGNATAEAISVPVS---NYQSDYSFNGRLGTFSRV---MH T--KAEMTVASAPEKALE---TVTVNEWTQSKYYF-YGKGFGGH SSA-VSHVHSAPRVANTD---H-E >gi|27366289|ref|NP_761817.1|	  1033 residues, 50 /line  Ribonuclease E [Vibrio vulnificus CMCP6]

--MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRV EPSLEAAFVDYGAERHGFLPLKEIAKEYFPDG-Y--

---S YQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRI -EGDERTELKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWAAIKD---AS- -ESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRP DFVNRVKKYDGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDIN SAR-AT--KGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENR LREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALS VLRLIEEE--ALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITV VPNSDMETPHFEVIRVREGEEVDLLSYLLPKKLEAMKEA--EGKESPETEYK PKK-IEEPVLKGF-A--SPAQSVPA--PAPKA---AVAKVANEKPQAEEKPG LFGRLIKALGSFLFGSAEEKVEA-EKTER--- KDEREKGNRRQK-R-DRNDRRRNNRDNNRENNRDRDGKRRQRNR DE-NVVETQDEAIKPRSQQK--RKQRPA---QNKADNAV- --ESKANAKVAEKGLQLAAEAQGAS-K---QEGQKTPSKAEKVKERRQRRKLNKPV RVKDQLEQAE--ET-LMDAAPVVEAETFNKQNTPASEKA-EKVVADTVDAMDN---SENE EKPRRNRRSPRHLRASGQRRRR-GR---DRR---PNPFRLRKGGVASPEMAM GK-VMPRYIPKP-VAKKEEMVKEEVVTAVTAVPAMQGGVACPE- MAMGKVIIRRDITAAQTPTETKPKRSKSR--NNKPAKAAVVEVVTEEP TVEN---AVVATIQETDVQKIEPQVESVSQP---VEQVSVETTEVVAEIVET TEVVAEVESATE-TVANETEATVAVVESSIKVIKAQ A--SAPMTKAPGPQELIE---IQVVAAPFKAER---YAQRGAGS QVA-TSQASAAMTKPEM--V >gi|114326947|ref|YP_744104.1|	  949 residues, 50 /line  ribonuclease E [Granulibacter bethesdensis CGDNIH1] MSCHAPQALARIRLRLCVPFATIHR--HNVMPGGARRSR- ISRVCTG-

--AHYSMTKKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRV EPSLQAAFVEYGGNRHGFLAFSEIHPDYYQIPVADRQRLLAMQEEEAREEEEAEEAEFSA AEARRSASRPLNNAREVIQADSEQPEASDPQEDGADHGVQDESAADFS GEAGDEGSVPASAGEGDDQEESRQASRPARQKED---RERRSPR FLRNYKIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNSPRGGGVSRKI TSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWDDIRD---IT- -LRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRMLMP SHARKVICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDVN SGR-ST--KERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERR LKEALKNDRARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVH VLRAIEEE--GARRRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLF SADTQFSGSQLRIEKIRARAM--EDVVRTPLIGVADPQPSVAGDLYDF ADA-SDGFATFEAAPVA--ALPVAVQAE---P VGT-AEEGNNGG--RLPSAEG---

DSEPGPDDGERRRRRRRRRRGNRRNDGAENGMDARSEQDENGNPVEEG EGVRHGDANT--SALPV---ETTELTV- AGVASKETSA---ETQGDAI DGTQAVSGEFGDEFAEDSRPRRRGRRGGRGR---R-

--QPAQANGHDAGEVAYTGPTPADP---FGQQPL-- DVFDVMDGIEQPMI-- -RDGKVDQGSRSERHPDLVPEPVVVSEEQA--EP---YIAPPIQPVVI EDTAP-R---ARRGWWKR--

>gi|77462682|ref|YP_352186.1|	  936 residues, 50 /line  Ribonuclease E [Rhodobacter sphaeroides 2.4.1]

--MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRV EPSLQAAFVDYGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHG RSRRRSRPAPAAAASGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAP DADEKPYRAMDHASDGDD--EIESVADEDVAEEI---PAPRKPR -SRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKI TQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRLWEQIRD---LT- -LKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKDFMRMIMP AHARQVIRYDEP-MPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVN SGR-AT--KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKR LKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQ VLRQLEEE--GTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRV EADPSLSSPDYVIEKFKTATRVVPEAVKVI-- -SGSADLMGAPVDEPE---D DWV-EEEPEIVEEAEEVADAA---

EAAPSEGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDED EGDAADEPEAVEAAAAV---PELAPEA- VVSAPEPAAA---EPEPTPA DPVAAPAAEEPAAPRKRTRTRKPKVTE---E-

--APAEAAAEAPAEAPAAEAP---AKEAKKPR T-RTSRSRKTAAAAEAVPAVEVAVTVDETP-- -AEASLEIARTTEAAPETTPRRPPPKPPPP---KRLWPKRLRRS PSRWP-RRRARARTTSPSAAAGGRSAADLQRLTQGRLRA-PLFVPAGA DGRLARWPTARAGGIPGLRDL--R >gi|119025257|ref|YP_909102.1|	  937 residues, 50 /line  ribonuclease G [Bifidobacterium adolescentis ATCC 15703] MPRSVVPTTNEGLDQVEAVVSSDNSTNNAASSAGSVSADPAPRRRRG- GRRVVRGVGAAGASLELKVEEHAKAPLFEEPKLEPVQPARDSADF-ND ADDAEPSRPRRRRVTRYDDDDEMRDERPRRRRRSSVDVQDEDDRPSRRRRRISDEPRDDR DDRDDYGNRGNRDES--SEDRALDAVSALPEGHETRHNPRP---MTSLLFQEPILP AAPAGRGSSDD---DDADDTGRRGSDDARDSRDDRDDDRPTRRRRRRSHDTA DTDRTDASNDGRGRDDGNDRNNDAED-DDHGDSRRSRRSR RLNAQE--RRAAAEVEQIEEDLVLDGITYAPIDDESRNGNDDDDEQPTRTRRRRRG RGNHEEADEQQTSERE---SRRRHEDDDEEE-GTVTRRRRRRRG GSKAEESDETMSRRSR---KQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQNQL MEQDFLARREHVERLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNV LPSMEAAFVDIGQARNGVLYAGEVNWDSARLE

-GQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTG-VSRKL -SERERARLKNIVSKI-APKDMGVIIRTAAEGASEEAITKDLENLVRQWERITA---KR- --DEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAP DLKDKLEKWDPAE-HDGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVN TGRFIG--RGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRR LVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTVSA DY---DDP--YALKGGDP---FVKTNKHGH--

-GTDVQVPKGSSPDVKA---KLAQI---

---AAAAVAANNADLGEEEQE--E >gi|125561084|gb|EAZ06532.1|	  1065 residues, 50 /line  hypothetical protein OsI_027764 [Oryza sativa (indica cultivar-group)] MAARALGPP-PPHALGATRQAPRCPHAAAADASAPPTHGYRRGAAALGSALSARRG RHTLCSVQLMDALRGGNLQVEPNMLHSPKPLMSTRRDDSAITCKGFCTISWNLKSD VLDGYIIFVTGDPVTLGCWESDMAVQLSPSVESNNLWTA-EIKVPYGVHFKYNYFVREEN DASSDIIWRPGPEYSLSIPPVGRKKHVIVVKDLWMKTSVAGIPTPS--WGSWLMEANFLE DQFAKSGEHQN---IVKAHSVIDTVDRASSVGEHIILRLGNGTPLHVKNISENPSA SVHDDFTVTDKANSIKSSISEHERNQPVEEPWIL-GSVMAAKKSVAAGKHEKNRWKFVNK KQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKP---

VVQTKGKIEAKDIIRKL-RKMDKPPAPL EEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQ ---CDSAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFS---DYNDDSLP -TYEDEDDDMTDGELAD-EENDDESSAFPAEVVSENEEHMAFLPNSKINMIH SAEFESISSYDEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESS DDTNGSRWSQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVG-VSKKI -TGIERTRLK-GITKLLRPPGFTLTARTVAAGHSWEELQKDLDRLLSTWKGIIE---HAQ SAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAP ELCNRVDLYEKR-TPIFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSIDVN GGH-SMFGQGTSQEKAILEVNLEAAKQIARELRLRDIGGIIVVDFIDMTD-DIFEE MKKAVEKDRSTVGVSELSKLGLMEITRKRVRPSVTFMISEPCPCCHGIGRVEALDTSFSK IEREICRRLAASGHKSDPEKPKSWPRFVLRVDHEMCTYLTSGKKTKLGLLSSSLKVWIL- --LKIARGFARGA-FELLPY SD--

--EKETD---E-

--RKEETSESPPKEAGSPKLS---VFP-

IKKWM-SRAKRAK---

>gi|126640478|ref|YP_001083462.1|	  1041 residues, 50 /line  ribonuclease E [Acinetobacter baumannii ATCC 17978]

MREIANSYFQADPR--

--QTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQI -SGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQG---TA- -SSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMP RQLDKLKTYTLN-EPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDIN SAK-ST--RGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAK LREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLS IMRKVEEI--ALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTV LPHPHLETPHYEIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLE EAD-HGHAHVTATASTHAAAQ--KKANHA--TQPVAQPSA---Q KAASPCAWLENLF-VQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQFGQVAVPAVAEV APVQSNNAYISQSPVKQDVREHVEKDDKSQQQRQNNKKRKHKEQREQHHQSHEQQHQVHE EVVQLSRQEQRELKRQQKRQQQQDQQHQNNDVQHTENAVPRRDR-NNQQRPN RPNRHRDPSVLNENQNT---PVVVDEKQIKVDVIDAPKHDVMNTALII NVDQGQSEIVALTPERRHVERVETTSTEVAQEPTPAPVVAEKAAVV---ETKEEAQ PSQEAAQPQI-KRASNDPRMRRRQQREAKHA---KAATPS-IAPSQIPTLAQ HT-IGSLIRHVYGEDCTVLIEQFGLVPTFNRALQKFAEQY ASTLVVEVTAET---EEKKPVTRDAELPSHKPAEEAEPAPVLPLT---PPQAPAPR VANDPRERRRLAKLAAEQAFEQVKQQHSAQEEVATPAPVAEETVAAPTAE-- -TQATVEPAQQPLELNQSTEVVQPEAAPAE---EKATEETVAEA PAAKE-PAPSKAASKAKAAAEETVAPAEATTDTESEDVK-ADKDKPSR PRRPRG-RPPKKANPVA--E >gi|84498597|ref|ZP_00997360.1|	  1003 residues, 50 /line  hypothetical protein JNB_20433 [Janibacter sp. HTCC2649] ---MATQDEPTTQNDASTTDGA-ESAPAKAPRRRRA TKKAAAPVIAETATDAGSEPAAEPAADEATEAAPKKKAAKKTAKKAAPRKRATKKA VAQQEALLEEPTTVDEPLVEEDEALVEEPVVEPEPEKVEAPKVVP--- SFGILFQAPDVT AAPRRRRATAPAQAPSEGTIDSAPEAEAPAPTRDKSAKAEIDAPAEKPTRSRRGRAAKTV

EAAEPTEDDQAVEDQSG---DDDSREDSGDEPQEGARRRRRGGRGRRG RGGNERSDDNASDDATSSDSAESSDDSDESDDQDARADDGADNENGDGGTSRRRRRRRRS GSSADGDDPPGTVTKVREPRKERERERSDEPTAVKGSTRLEAKKQRRREGREAGRRRTII TEAEFLARRESVERIMTVRGKGDKTQIGVLEDGVLVEHYVSRETNASMAGNVYLGRVQNV LPSMEAAFVDIGKGRNAVLYAGEVNWDAAGLEQN--

--RAKRIENAMGSGDTVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTG-ISRKL -PDTERARLKAILKEV-VPEHAGVIVRTAAEGASEEELRADVERLTKAWEKIQQKVAAAS SK-KAGSGGAPVLLHGEADLTVRVIRDVFTEDFSELIVSGDQAWAEVSGYVEDVAP DLAKRLTHWTSE-EDLFSHHRVDEQISKAMDRKVWLPSGGSLVIDRTEAMTVVDVN TGKFVG--SGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRR LLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLIEVFSEQCEHCAGRGIIVQSEPVD--

--RTGTSNEHGHSNGAVG--

--GQGGDKSGSASSRGRNRRGKADSGQASAPKDATVE---

--DAPPVRSGPTAAQIAAAAHAAAIKSLSGESTDDDVA---DLAGPAD DESTQPTHTPVVESSEVSEPSE--

--PSHTEPAEPAEPAEP---TQVAPATV IAEVGRP-

--DSADDTEAVRPIVAEPAPIDQPVVRPRRK-RGRVVAPA GPP---KTADLEQGEND--R