At2g02540.1/MSA

>gi|18395372|ref|NP_565285.1|	  1218 residues, 50 /line  STI (STICHEL); ATP binding / DNA-directed DNA polymerase [Arabidopsis thaliana] -MSGSR--VSDLSKLHL--- KKEL TQIRK-AGRVLRDPGTTSSWKSPLDSSRSVALLETPASR---NGGSSSQF-- -PIRGESSTNRR-GKEKKVFLYNWKTQKSS--SEKSGLAKNGKEEEEEEEDASSWT QASVNDD-DDVSDARNGGDSYRREIQSASMGFRC-RDTNLASQG ---VSKMRKSNVGSCKKKSKKKISSSRLDCLSKYQPRDDIVAR--NCNAGSD DTEEELSNSEDLR---KVTGASPLLLKLKQKNWSRSSSRL--LRANNRKED- SSCTYNSTPALSTS-- SYNMYAVRNPSTVGSWD--GTTTSVNDGDDEL-DDNLDLPGRQGCGIPCYWTKKAM -KHRG--GCRSCCSPSF-SDTLRRTGSSILCGSQSVYRRH-NRHSSGGYSKQ --KIACRSAQGVLPLLSYGGD-GRGGSSLGTGLSDDELSTNYGELDLEAQSRLDGRRWST -SYRSQD-GLEAVALDGE-EEEGSTPETIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKR SRIAPVYLFQGPRGTGKTSTARIFSAALNCV-ATEEMKPCGYCKECNDFMSG KSKDFWELDGANKKGADKVRY-LLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFLKF LENPL-QKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDLH ALDLIAMNADGSLRDAETMLEQ-LSLLGK-RITTALVNEL--VGVVSD EKLLELLELALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVD- ---EKYSNAFFDGRN---LTEADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLL QLGSMPSPGTTHTGS--SRRQSSRATDDDPASVSRE--VM AYKQR---IGGLHFSKSASPAS---VIKRNGNHSHEAKPFSRVIDNNCYKSSSSSQ MIESEGSI--ASHENSIAST-MMLNQRS SEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGEN--- DIKLRAERF---LSS- -ITNSIEMV--LRRSVEVRIILL--PE--TE-LL-V VPHQTRKPEMTNK-SGHLNNIAGLNA-ETDVEVGSSVESRSKLP MQRIESIIREQRLETAWLQTADKD---TPGSIIRVKPE---RNQ ILPQ-EDT-YRQ-TNVASAISSSGLTTHQW-VDELN NEVKLLKIGDNGELQENLTGTRGQHCPLSPSL-LHDTNF-GNNKDNLGGYESGSGR VGCNILF-CWNTKK---TQRRSKSKQVKGTPV RS--RRNRKSRFSLFNGCAK---P RKAEG--NIRR >gi|115351816|ref|YP_773655.1|	  824 residues, 50 /line  DNA polymerase III, subunits gamma and tau [Burkholderia cepacia AMMD]

--MTYQVLARKWRPKDFASLVGQEHVVRALTHALDG GRLHHAYLFTGTRGVGKTTLSRIFAKALNCET-GVTSQPCGVCRACREIDEG RFVDYVEMDAASNRGVDEMAA-LLERAVYAPV--DARFKVYMIDEVHMLTNHAFNAMLKT LEEPP-PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQISFELQ ALRLLARAAQGSMRDALSLTDQAIAYSAN-EVTEAAVSGM--LGALDQ TYMVRLLDALAAGNGPEILTIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGS--VLD EWPEAADLRRF---ADALSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLL RMLAFEPAVGAGSAPGG-QPAVPRAVPAPAPRATAAAVSA --AAPKSAAVPVA-APAPKAPAVAAP---AAAAEAVRPQAAA---PVAPAAR PSPVQSGD--AVTSSAVKPVATPAAASAE---APAAPQPQANPAPQV- APASDAPPAVRNEPE---PSAAAKRVDEPAAPAVA--KRVDEPAAPAV AKRIDEPAA---PAEPAPRATPAAPAAPAARPSARG GAAAALDVL--RNAGMRVSSDRS---RADAA-PKSAAAQPAAD-KPAP SRPAVQVPTPRAA--ARA-- PQAADTRQAP--PPWEDIPPDEYVPLSADEMFGGGADDGFVPVFDSGPDDVR IAPKPAEARPSAPVDTRPLPPAIALDPIGFDGEWPALAARLPLKGVAYQLAFNSEL TAVDATTLKLSVPVPQY-ADAA-QVAKLKAAL-ADALGK-PVEVA---VEVG PARRTAAALDAAARAARQREAEQEIH--GDPF VQQLVR--DFGARIVEGSVR PLADSAPDGAPPTLH >gi|118029019|ref|ZP_01500480.1|	  793 residues, 50 /line  DNA polymerase III, subunits gamma and tau [Burkholderia phymatum STM815]

--MTYQVLARKWRPKDFASLVGQEHVVRALTHALDG GRLHHAYLFTGTRGVGKTTLSRIFAKALNCET-GVTSTPCGVCRACREIDEG RFVDYVEMDAASNRGVDEMAA-LLERAVYAPV--DARFKVYMIDEVHMLTNHAFNAMLKT LEEPP-PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEENIAHEAQ ALRLLARAADGSMRDALSLTDQAIAYSAN-QVTEEAVRGM--LGALDQ SYLIRLLDALVAGGGAAVLSVADEMALRSLSFSTALQDLASLLHKIAWAQFAPSS--VLE EWPEAADLRRF---ADALSPEQVQLFYQIATIGRSELGLAPDEYAGFTMTLL RMLAFEPASNGGGGSGG-G---VAPAGR---TSVPA --AGAKRTGAPVA-A-APQARATGAA---A-- --PSAASGE---PGVAPIVKAEPAPVQ- PPVVQQVPATAASTDLVAPEIEAAPVDGDATPLSASAAQAAASVETPVA--- SNGTEQNAA---PHD---GMPALAAAAPRRAG GASAALDVL--RNAGMKVSTDRG---RSAVS-TSAAAAAPATPVKAAA PRVAVRVPTPDPARRAA--AAAQQ ESAARAPTPRAAEPQGASAVPPWEDIPPDDYMPASSDDAFFAPPDDNFVPVFDSGPDDML VGRGHASAAASAPAAPVIDIRTLPPAVPLHAIGFDGDWPALAVTLPLKGISYQLAFNSEL MAVNGKTLKLNVAVQLY-AEPA-QIAKLKAAL-AERLGS-EIDVQ---VEVG PVQRTAAVLDSIERAKRQQEAEREIG--ADPF VQSLIR--EFGASIVPGSVR PLMPGAEGGQSAA-H >gi|115474561|ref|NP_001060877.1|	  799 residues, 50 /line  Os08g0120200 [Oryza sativa (japonica cultivar-group)]

---MIEGRRHSVDIPISRAL LAVMR--SRSLRDPETNSLAKFSAKKT-IW-- EGCSLEEDDLEGSNYGRHSFS--- --YN MYDHLQRRRE-- -EFGDSAR--SGRLVNSPIN IIK- ---A---NARVKAALHNQTCSSVISGMSR--A

-TKDRASS LMIEGEQLGR-REGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLK GKLAPIYLFHGPHGIGKTSAARIFAASLNCHS-SGGNQPCGHCEECMAIFSG NSSSVIEIDASKLDCKSRVAA-LLRNACEVPA--SSHFKVLIVDDCQHMDKEGWYSVYSS LEGIP-DSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAE ALELIARKANGSIRDAVQMLDQ-LTLLGK-RISKSVTYDL--IGDVSD EELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGRHQSDS- QEVRKVTGKHT---SAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALL QFNMREPYCLDDAAVSS-MFTE--

-SQTDDGA--AILKDESLDTSSHLCYQNK---IGCLDMNLGD-- PDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHP--- EDVPTTESF---WNP- -FVVSLQNL--LKCNVDIRINLS---PISTS-NRVVSKNSSVS-LVMQ SREDQETEDPVAAG-CRTVA SSRKECPSPLAVQPK- -EKPSHILGCLHATDGDAVDTESRILSYQ-KI SVIPEASTPGNGSFKAG-GHTP-KVDEARA-- RRGCFSKLLQRRAG--APYQ NGALPR--RGLFKCCFCKIRPDCK TKVEETDGFQGHSKN >gi|118737307|ref|ZP_01585711.1|	  716 residues, 50 /line  DNA polymerase III, subunits gamma and tau [Dinoroseobacter shibae DFL 12] ---MRRALQPGAAKGNA--- ---VFEWHGPCP--PSRPCLPRD-

-ARRRNRRPALR TGRVLQ---SRGRMRISQIER-LARASASPT- RSDPEGS---SRNEP-

--RLGRC-PASHLSPTRRL-LRPEWYAAAP--RRWTLPL- -RGPTLWPERV-RWG- ---DMSDTTTTGYQVLARKYRPATFADLIGQDAMVRTLRNAFQA DRIAQAFMMTGIRGTGKTTTARIIAKGMNCTG-ADGA---GGPTTDPCGQCDNCRGIMAG QHVDVIEMDGASQTKIDDIRANVLDSVYYAPA--SARYKIFIIDEVHMLSTSAFNALLKT LEEPP-AHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEPEVMIAHLRRIAGLERAEITDD ALALITRAAEGSVRDAMSLLDQAISHGAG-ETTAEQVRAM--LGLADR GRVMDLFDLVMRGDAAGALTELSAQYSDGADPMAVLRDLAEVTHWVSVIKITPDAAED-- -PTVSPDERARGQAA---AAELPMRALTRMWQMLLKALEEVAISPNAMMAAEMAII RLTHVADLPSPEDLVRKLQTMTPPPATPGG-GAAPGGPGTGVSA RGHGAAPAP---RGGGVRAS AGPALAMAQ--- --ADP--- DALARFRRF---DDV- -VAL---IRSHRDVKLLVE--VEGCLRLA---AYS-PGRI EFAPTENAPRDLAARLA--A ---RL--- -QSWTGAR-WAVSVVAEADA PTIAETRD AEKLEMERNALDH--- PLVAAVFAA-FPKARI---TEIRTREAL TQEAAIEALPEVEDEWDPFE-DD >gi|125579060|gb|EAZ20206.1|	  949 residues, 50 /line  hypothetical protein OsJ_034415 [Oryza sativa (japonica cultivar-group)]

---MADMRRHSVDVPLSRTL VQLKR--VRSLRDPATNSLSKYASPS-- ---DNMIWETASSNGV--AMDLGRSAHHQLI- --EEDGDLEAEATLGSERSFRAPN ARTASYRKSS-- --V--VKIRGLNPPR---NKQAHRARQDGHRK-SVDSSHSNHSSIRQLANTM ---VNNVAEEKEEEEEVN-SYERSVPTPPAKTDEEVKMPGFSKFRNKSSA-- AMSRVGSPCMSASEA-RSVRSRRTEETQ---VRSNDVVGSNFSGCGISYCWSG--A SKYRE-LYYD-- ---SDGPEQPLLSPEG --T-DAAF---QENVPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCK GKVAPMYLFHGPRGTGKTSTARIFAAALNCLS-LEEQRPCGFCKECVILFSG RSRDVKELDAAKMDRLGRVKA-LLKSASLVPY--SSRFKVFIVDECHLLPEDAWSAILKS LDEPY-RHAVYIMITSDIDSLPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHD GLYFISAKSNGSLRDAEIMLDQ-LSLLGK-KITISLVHEL--VGSVSD DELIELLDLALSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDILSGRCQSAV- ---TEVSKSFLGRYA---LAEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALL QFGTNESNLIAESNDMHAHSAIGYTDDWVSKVNSSSNFC- ---H ACNSNKSN--CSERH---CR RLKLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHP--- DHISRAEKM---QSL- -IESTLQNV--LGCNVEVKFKLV--PRPVR--KDARSKRQSFS-LLSC SGRKQ--- --ELSDSAVTDEDETVRHGARE-- --TPSKGYSSQQ-QSPFIMQRTDSKPTVHGCEDDAR --STL-TSNRSMTDDMTRTCRSETNYSKGVS- ---EQGRFDSIQEPDLQPNCFSRTLKLQKRFFSSDAAHTICLKIQPHN KMDFLPKK--EFDTYFCAYEPYEQCSRSNSHATCSSRDD- -NL >gi|125588189|gb|EAZ28853.1|	  1022 residues, 50 /line  hypothetical protein OsJ_012336 [Oryza sativa (japonica cultivar-group)] MPTPDR--AGAV--GATARGG-GGGGG-HLRGHAHLTNCIHLRH HHAHGGGGGGGGASSSGRRRSPT--SVASAALMRDL LALQR--SRSLRDPSTRRSVESSSKVA-AD-- PDADTDEDDADLPPKSRRSASTT-

--GALKTLLDQL AE-NPQPKQVRRPPRRFKRGAGRR--AGAASKAPDR SAAAAAAAAALSVNSSSQEAVCGNKYLFR--DGEDG LD-E---LQQHVPPQDSRNVCGIPWNWSR--L -HHRGKSILDMAGRS-LACGLSDPKSA-AGRKSEAGAG--ASRGHLNGS--HSLFPVKSE RLASSTSSDSDALPLLVEAAATGARNGGIGGSYSGELGIFSNQT--SEMESD LLSEGRS-GHKSRGSQHG---RGRHRSLTQKFAPKTFKDVVGQSLVVQALSNAVLR RKIGLVYVFYGPHGTGKTSCARVFAKALNCHS-PEHPRPCDSCTSCIAHNLG KSRSVMEIGPVGNIDMDGIVD-VLDNVMLSPA--PSHYRVFIFDDCDTLPADTWSLISKV VDRAP-RRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNTLQWISTSESLDVDRD ALKLIASRSDGSLRDAEMTLDQ-LSLLGQ-RISLSLVQEL--VGLVSD DKLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTR- ---ERLRRKFFKRPT---LSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALL QLAPDKQYVLPSSSST--SLNHGVLAGSFPDRDMAIHS-- -ALEHNGNMASTSYRERRPVE-HTSNSH LLSTSAPR--ANEQSR--NS KIENELIWHAVLESIQSDTLRKIMAKEGRLSSVSLGTAPTV-QLIFSSR--- VNKSKAENY---RGQ- -ILQAFESV--LRSAIILEIRYE--SKNDVRASHAPAVFSHGE-NESSNTTLRRS-FTKH SPLSS--GGENLRRRLK--K ---DRASSSKTTWMQSDPHILTEG--EIIEVGPS---HMH WHDETNND-VHNVNQRRKDNVWEEESLASPNSKANQGRN- -GNKQ-RRQN-SIVKGKVSL-AHVIGK-AEACS--- QRGG-WS-

RQKAL---SIAEKLEQENL >gi|125594969|gb|EAZ35028.1|	  1011 residues, 50 /line  hypothetical protein OsJ_018511 [Oryza sativa (japonica cultivar-group)] MPAPAA--TAAA--GMGSGGGGGGSGEHHMRGHAHLTNCIHLRH HHAH---GLGAGSASSGRRRSPTG---SSASASAALMRDL LALQR--SRSLRDPSTRRSGVGLGL--- --GDYFQDESSRP-G-

--CALKTLLDQL AE-NPQPKPSRGPRRRFKGGAGRR--AAPASATGGA LDRGVDGAAAVSVNSSSQEAVCGNKYLFGVVGGDDDDDDE CGVE---LQRPQASQDSRNVCGIPWNWSR--I -HHRGKSFLDMAGRS-FSCGLSDPKSASAARRSIAATSA-GSCGHMDGSRSHPHFPVTAR --LTSTSSDSDSLPLLVDGVRNGI--GGIARSFSGELGIFSNQT--SELDSD LASEARS-GQRSRGSH-RGRHQSLTQKYSPKTFKDMIGQSLVVQALSNAILK RKIGLVYVFYGPHGTGKTSCARVFAKALNCHS-PEHPRPCDSCASCIAHNLG KSRSLVEIGPVGNIDLDSIVD-ILDNVMLSPV--PTQHRVFIVDDCNTLPPDTWSVISKV IERAP-RRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIVNTLQWISTSEGLDVDRD ALKLIASRSDGSLRDAEMTLDQ-LSLLGQ-RISMSLVQEL--VGLVSD DKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQ- ---ERVRRKFFKCPT---LSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALL QLAPDKQYVLPSSSTS--A---SFNQGLLT--CPEGDIGRST-- -AIDHTNIYA-- -GPH--GLPRNA--NL GVDSDNNMAGTRRGKGPAPTV-QLMFSSR--- VNKSKAERS---REQ- -VLHAFESV--LASAITLEIRYE--PKDDARAGHVPAISPYPE-DSTSNVALRRS-FTRH SSASS--RGENLIRRLQ--K ---DNVVHGANSNQTRWVQSDPHILTEG--EIIEVGPS---QVD WHSEPNNS-AGVRKENIVLQGREVV--- -NNEH-GRQN-SIVRGKVSL-AHVINK-AETCS--- QQGGDWSLSRVYFVGRLQALLDERVHSIGYLDLPLFES-- MQLLAF---SLK---ETPYIKAAA LQPAY---ALSQVYPREKR >gi|4539401|emb|CAB37467.1|	  1057 residues, 50 /line  putative protein [Arabidopsis thaliana] MTTTTTTTTR--VASSSSTRNNRILKDAN-GDIGE-HLRNHIHLTNCIHLKN NM-H--KQSPVL---TDRALMRDL IVLQR--SRSLRDPSASPPAWNTPPSV-VDLL PKKGDLVEGGRRSVDLKKSSRRLSALSGSSPVVNFG--TSKVTPSDERSGP- --VSGERDSGRRVKREESSRKSYR IGDDYQNVNEVVSHGSGSKASRRLSRVND-AMVKTLSDQL NEV--VVGDS-DDVVSSNVRPRVRYGGGGGGG--NTRGCAGGMS RPKRRKFRGTRRVRGKSRDTGGGKSEM--SVASNTLPQVE KHDG---EKEGFGEQNMTKACGIPFNWSR--I -HHRGKTFLDKAGRS-LSCGMSDSKG---GRKGETNERNGS--DKMMIQSDD DSSSFIGSDGEALPLLVDSGENDGWVHDYSGELGIFADSLLKNDEDSD LASEGRS-GEKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLVVQALSNAVAR RKLGLLYVFHGPNGTGKTSCARIFARALNCHS-MEQPKPCGTCSSCVSHDMG KSWNIREVGPVGNYDFEKIMD-LLDGNVMVS---SQSPRVFIFDDCDTLSSDCWNALSKV VDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEIDKD ALKLIASRSDGSLRDAEMTLEQ-LSLLGQ-RISVPLVQELVSIVLSHHHIKQLKVGLVSD EKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLATVITDILAGSYDFTK- ---DQHKRKFFRRQP---LPKEDMEKLRQALKTLSEAEKQLRVSNDKLTWLTAALL QLAPDQNYLLQRSSTA--DTGGRE--SSDHHLD--PSSDAAGGRSS-- -GLDRRR- GDSR--KN RPAVEEIWLEVIEKLRVNGLREFLYKEGRIVSLNLGSAPTV-HLMFSSP--- LTKSTAEKF---RSH- -IMQAFEAV--LESPVTIEIRCE--TKKDPRNN-VHHHHHHPT-VKDK

-SLPQSLALIGHDYNIDGSGRSEIVEVTES---NGQ RRQQQKQQ-EEERTEPVG---SSALARARRKHL-EAS--- --QSQ-NQSQ-SIVRGKVSL-AHVIQQ-ADGCS--- LQNG-WS-

KRKAV---SIAEKLEQENL >gi|9758675|dbj|BAB09214.1|	  900 residues, 50 /line  unnamed protein product [Arabidopsis thaliana] ---MSR--VASS--RVLKDSN-GDIGE-HLRNHIHLTNCIHLKN HM-H---NNNKQSPVL---TDR---SLLMRDL VVLQR--SRSLRDPSASP---NLK EDHQDSREGRRRSG-LRLSGSSPIVSFG--TSKVTPSDE- -KFDRSSRKSYR V-EEVNEVYSVPSVKSVSK-DRINKKVNE-AIVKTLSDQL NEV--G-GDSDDLVS---CNVRPRGDGCRRRKFR--GTRR--AGRAVNVRDN ---AAGNESEMSIASNSVPR--GEKYEGE--- ---EGGGGRDREQNMSCGIPFNWSR--I -HHRGKTFLDIAGRS-LSCGISDSKGRKGEAGT--P MFSDSSSSDREALPLLVDSADNEEWVHDYSGELGIFADNLLKNGKDSV I---GKK-SSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAK RRVGLLYVFHGPNGTGKTSCARVFARALNCHS-TEQSKPCGVCSSCVSYDDG KNRYIREMGPVKSFDFE---N-LLDKTNIRQQ--QKQQLVLIFDDCDTMSTDCWNTLSKI VDRAP-RRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKD ALKLVASRSDGSLRDAEMTLEQ-LSLLGT-RISVPLVQEM--VGLISD EKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTK- ---DQCKRKFFRRQP---LSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALL QLAPDKQYLLPHSSSA--DA--SFNHTPLTDSDPSNHVVAGT-- -RRDDSKQ GFSC--KN RPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSA-- --KSTAENF---EEH- -ILKAFEAV--LGSPVTLEMRTE--SKKDLGFSSLQGL--

--SNGERFRESGRSEIVEVADS---E-- --SPMTRVRRKHL-EAS--- -QNQN-QNQNQSIVRGKVSL-AQVIKQ-AEGNS--- -WS-

KHKAV---EIANKLEQENL >gi|139438753|ref|ZP_01772237.1|	  825 residues, 50 /line  Hypothetical protein COLAER_01240 [Collinsella aerofaciens ATCC 25986]

MESLYRKYRPLTFDSVVGQQHIVSTLEHAITE GRLSHAYLFCGPRGTGKTTMARILAKALLCRN-AEAARAEGASGCLPDGACEECELIAEG NHPDVYELDAASRTGVDNVREEIINSVNFAPV--RGKYKIYIIDEVHMLTTAAFNALLKT LEEPP-AHVIFVLCTTDPQKILETILSRCQRFDFHRIGNEDIEHRLSYVCEQEGFDYDDE ALAIVARHAKGGMRDALSTLEQ-LSVFGNGSVHADDARSL--LGEVSD QILGEFSRAIADRDVAELYGLIRAQVEEGNDLLELTRDLVAHVRDVYVACVAGARAELFE GGSEQAEALAAEAAA---FGEHPADRLARVLTVLDDAALEMRGASDVRLVLEIACT RLARPEADLTIEALAE--RVARLEA---MIANGAVPASVA---AAQAAAPAASVPA --AAQQPTLISGARAAAPAASAAPAA---TSARQGGMPWDRG---AAVPAAQ PAPKSAAP--APAPRPVTPAPQPVAAPASAPAASTVSVSKPNNAAQVAAAGAAETPAVED AGELQRKWAEVVERVKARQASYAGLLLNARATADDGSKLTVSFPAGSTFAIKMLGRA--- DTQSVVLP-TVCAV--FGRRTVDYVLDGGGTPAPQH ---EEHSPSARAAV--SADPQPVSSVPPASSS-ASATQP-KAAP VAAPTPSAPEPAAPKPA--- AP---IPA PKSAAAPAPKSSDLAKAPWL --RSD-NPAG-APATGKLPT-EPAPRA-PERASVPM AQPPAQAAPWESEQV-PYDDAMVGGFAAD-AGGDDLPPFDVSGAASATKAAAVAPAAS-- ANDDVPAAPWESNPGA-GSPFGH-QGAAPSIPQTED EAKALIRSVFGQATIFKPV---E >gi|147765605|emb|CAN69246.1|	  1057 residues, 50 /line  hypothetical protein [Vitis vinifera] -MRSLRNHHYHAWPKRQNQADRKSESKEKNDNNVNRTKRRRFIKGQKAVPSE EARW---ATFSRHSNKTRRRSTTLFWISIVDEVLIFVFHFMVLMMDGRRHSVDIPISKTL VALRR--VRSLRDPSTNSMSKFSALV-- ---DSLNWETNSSNGI--SLRFVNGFQEGGP- --DN-NGXLGLENFPGQ--REELY GGL--RKPDPKLFSSEN--- PGF--FGNTGLAPTV---TKRADGLDYCGTIKEEAYDKKSLSERYCSGLRENGLDL ---MNITPSSNGLEGADS-CNGPILGSSHAERTDHXASKWKSQYKNQLKSFT GLGDVVSCVGSPCPSLSDVLLEGSSRSTSLLA---NEESNAIDHNDRGCGIRCCWSR--T PRFRESN- -LLSDVEDNPLLLGEVGETILSGQKWSW ---KCFNNEITPYSESPRSLSQKFRPKAFNELVGQNVVARS---

--RDSKEIDTVRINQTGRMRS-LIKHAIGRPV--SSRFKVFIIDECHLLRGETWATVLNS LDDLP-QHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICVEECLEFDQV ALDFIAAKSNGSLRDAEMMLDQ-LSLLGK-RITMSMTYEL--IGIVSD DELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDILAGKCQEGT- ---SEVRXNF-FEGH---TSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALL QLSSVESSFLDANDSR--AFLRTEHPRGENVKRLVTCACDNNKPHI--

---CEVQED--C KGQLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHP--- DYVSKAEKS---WKL- -IASSLQSI--LGCNVEIRINLA--PCTSVK-GYAKVKKPSFS-FFSC SRRMR--LKSHSTSEHG--- --SDQSDCSDFTSE---KAM IRDKTIGTCSSDCGSQ-VSHVCYXRTEAARTLRNREGNVL --GIG-TITP-HRS---FQB EIPKGTGFEV-GSSKEEQSSCGCQEPENQPNCLFNTFGLHKKLRSSEASQMTCLRYQAQN KLALSVPKNTSFEPYFWANDRYAFSSSSNNFNSCPRDEDGLREDSKVHCWGAPTFPLKKA WQSRHRREGSNLVGWVLPCGATK >gi|15233988|ref|NP_194210.1|	  815 residues, 50 /line  ATP binding / DNA-directed DNA polymerase [Arabidopsis thaliana]

---MGETRRHSVDVPITRTL VALRR--VRSLRDPCTTSMSKFASLL-- ---DNVKWETGSNNGI--SLQFVEHADDACK- --AAADAPVGLIPFGSYSIMEELE SGCDLHKLSSKVINVEG--- -DAC--SRSSERSCSDLSVKGRDL ---ACNAPSISHVEEAGS--GGRYRTHYSTKLAS-- SVGEYGSRLGSPM--NSTNHSYYG---DEDVDFDSQSNRGCGITYCWSR--T PRYRGSN- -QSSDVEEYPLLPGNGNGESD--- ---VVTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILR GRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSG RGRDVMETDSGKLNRPSYLRS-LIKSASLPPV--SSRFKVFIIDECQLLCQETWGTLLNS LDNFS-QHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQG AVDFIASKSDGSLRDAEIMLDQ-LSLLGK-RITTSLAYKL--IGVVSD DELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS- ---SATRLRF-LTRH---TSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALL QLSNTDSSSFATDEN--GRNQINKDVELSSTSSGCPGD--

VIKSDAEK--GQERNC NETVESVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTP--- QHVARAEKS---WKL- -IADSFQSV--LGCNVEIQMNLVISACSPPK-SAKAAASLFFG-LFSC SRRML--HKSYLTTRTD---

--SDCASEKPAVTNSLRSCQGNVL --RAR-SVRSSAN---

---A---SSRMSCSSD QGDATSAMCTPHIPPGEKR >gi|23129966|ref|ZP_00111787.1|	  707 residues, 50 /line  COG2812: DNA polymerase III, gamma/tau subunits [Nostoc punctiforme PCC 73102]

--MSYEPLHHKYRPKSFAELVGQEAIATTLTNAIGT SKIAPAYLFTGPRGTGKTSSARILAKSLNCLK-SDRP--TAEPCGVCDVCQGITKG YALDVIEIDAASNTGVDNIRE-LIEKAQFAPV--QCRYKVYVIDECHMLSTQAFNALLKT LEEPP-RHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAMVKHLSAIASKENIHISPE AVTLVAQLSQGGLRDAESLLDQ-LGLLAG-VVTPDRVWDL--VGTVSE QDLLGLLNAIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYRDLLIAKTAPNRHDL-- -VACTQQTWTALVEF---AQYFDMTMILAGQEHLRKAEVQIKNSTQPRLWLEVTLL GLLP--SATTNIQPQ--APNIAPRVIPPAVSPS--- -YPPAVTQNHAVSSLPVAEPQTNHNSTLRQGSVTTNHH---VAIAQNQ PVTSSGAV--EQQKNHNSAAN---SVSPPTPEPVAVPVPSAIVEAVTSEVVGE--A QYDLTQVWQQVLANLQPKSRQEMLRQMSQLI---EFDGVM-ARIAIK-Q--- AWYDKGKSY---LPM- -ITAAFQQT--FQREIQINIEKGISSNSTSAKKNPPPKDSSRVQQP--ATP-SYNQ QIS-PPALVPQPA---

--TPAPLRTEPLAKNGNGANGNGA --NGN-GVNG-NGVNGNGANRN-GANR-NGAQTLPP PPQRTPAPDWEIDEVAIAAQRLAEFFNGQIIRFTEDSTEFSDSIATPEWVEESE-- VDD- --E >gi|86608779|ref|YP_477541.1|	  779 residues, 50 /line  DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a(2-13)]

--MATAGNYEPLHLKYRPQRFADVVGQGAVVQTLANAIRL GRVAPAYLFCGPRGTGKTSSARILAKSLNCEQ-GPTPDPCQACSQCRAITAG ASLDVLEIDAASNTGVDNIRE-LIERAQFAPV--NSRYKVYVIDECHMLSNAAFNALLKT LEEPP-PRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDDMVAHLGKIAAQEGIPITPE ALQLVAQLSQGGLRDAERLLDQ-LSLLEG-SITPEAVWDL--VGGIPE QQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTAPQQREL-- -VAVTDSTWAALQQR---APRYSVEILLAAQSHLRQCEPQIRQSGQPQLWLEIALV DLLGQLRPSMVAEDS--AERSPFPALDLSPAPQRTPPD-GTAPPAPAATISP --S--SPSTVGEIDELTVGPSASPAV---ASSQKADRATRTE---SSEQPRE PARDAATV--K- --LLRPHWDEFLKRLSPLTKALMGSGH-LHQ--ETPEAITLAFPSKGLV--- EKVRSKEAELRSVLHNLLQRPVQLNLIVQRSSGPHVSIR- -VSGAESSALLSRETDLPPAPVAPDPVTTPGLQSDSTNSRASSREPRAEPQSHGL-ARRQ QHSPSDSNPPSPEPERD---

--NP-MGGPKVA --GLAT-QGLSPAGANKVLRTAVATDS-PSRAERRD TLHGGQSFELT-QELAEIARCFADHFNGSLVDLEGVLESDVTGSTEELSSIEAIEAEG-- SPDLLSGETYGSPTGAEPSASAGRSPHPVDFPNAVR---NPSYRREQS SQLAVRLSGTESLEEEVPF >gi|115487814|ref|NP_001066394.1|	  1174 residues, 50 /line  Os12g0209300 [Oryza sativa (japonica cultivar-group)]

MGPMVEGCVGPSELHLRKEL TALRK--ARFLRDPETSSTWRSPLDSRPLA--AASNIVH-NSNGVGDSIAPK H-TESPTPSKGE-KKQKKVYLYNWRQYSNK--SSESGM--KLDED--- INLESPHNSNGVGLKSNA--CQDDPVNIYNFQ SSTSCTPIKRVARR-SRVLLSKKGTAR--DPAVSKLL--DLHV---NSTEQT EDTEN--SEVGYFSRPTSPLFAACGCVS-ASNTSRL--LK-VGRREG- SSFS--CTP-ISTR-- SYYKHGRANSSTIGSWD--GRTATSFDGDES---NQSTLWRSRRSHVPGYSSKRN- -KCKG--SKRS-YSPSL-SDILRRKGSGLLCGSQTLHRKK-RS--FGS-LKW --GHSKTSAHG-MSLLDGSCD--FGSSSFDS--SSDELSTNVGELDLEALSRLDGRRWSS --CKSQD-GVDP-AVHGADLAMADRRSLSQKYRPKLFSEIVGQHIVAQSLSNAITR EKIAPAYLFQGPRGTGKTSTARIFSMGLSCL-APGENKPCGICKECTDFLSG NGTNLIEVDASNRKSINRIKN-LLENIPPSAT--SSRYKLFVVDECHMVSSKLWSAFMKF LDEPL-PRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDIVCRLRRICVKENLDVELA ALDLIALNSDGSLRDAETMLDQ-LSLLGK-KITPSLVNDL--VGVVSE EKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLAD- ---STANDMAVGGRS---LTDGELERLQQALKILSDAEKQIRLSSERSTWFTAALL QLSCGHSSEMNQARS--STTECHKSMNDAVTEAGRESSSSRAASHSISAFGV SKKLLDPKATSLHSSPQALASHSSRSRLNG---NFAYGGE CMSADRFLQDSTQRSNYSEQ-KVLVNGN LESLAHIWMRCIENCHSKTLQQLLFDHGKLVCVRQCEGCVLAFIAFEDS--- SIRSRAERF---LSS- -ITNSIETV--LRCTVEVRMGLL--PD--FIASGLTSE--MGPNVRRAESD-VLSC SSNSDRLKGTLNTSSRNFDYSDEVKKGLEQFKFASA--GDERLQSASVTSVNS--GKTKA THMSKI---SMIDEQRLESAWLQAAEKH---TPGMVNQTRPD---RHQ VVPQIVSP-YER-RSSMALVVPSGQE-DEDLS HGIKAMKIVDSYGVQKDQNGRNVNRNVVSPSK-LHSDDYYMENCDKE-SIVLNH-- SYRL KFIVAR-K---L DDLVALAFSTVGKLKDQRG >gi|125533942|gb|EAY80490.1|	  1232 residues, 50 /line  hypothetical protein OsI_034449 [Oryza sativa (indica cultivar-group)] ML--VFWLCSYAVWEVA--- --AYGEAAGGCGMGKGGRGNMGGGYGGARSLG QYITS--VRLLKN-NISLLGQCFLLIITIS--LAPKLWQLWLRGVLVQIGSNVSQK HIEPAAAPPKGE-KKRKKVYLYNWRHHSNK--SSESGI--KLDDDDRQ ASADCSLESPCISNGVDSRSET--GLEVPVSIYSVQ GSNSGTPVTRTVRRVRRSSLSKKGAIR--NSTVSKLL--DLHV---NSGEQS EDTDN-YNSENHELLQKGGYFSHSTSPLFAASGCLS-SSNPSKF--LK-VPRREG- SSFS--CTP-VSTS-- SYYRYRGRNPSTVGSWD--GTTAASLDEDGL---NQPELLRSQRCGIPCNWSKRN- -KHKG--SERS-FSPSL-SDTLRRKGSSLLCGGQTMHRRK-RS--SGS-SKC --AYLTKSSQG-TPLLDDSCH--FAYSSFDS--TSDEVSTIFGELDLEALSRLDGRRWSS --CKSQD-GIAL-PMSGADHAVSDQRSLSQKYRPRSFNELVGQSFVVQSLNNAIIR ERIAPAYLFHGPRGTGKTSAARIFSAALSCV-AIGENKPCGACMECTDFFTG NGINLIEVDASNRKSINRIRH-LIENIPASAT--SSRYKVFVVDECHMVSSKVWSAFMKF LDEPL-PRVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIVCRLRKIAVKENLDVELA ALDLIALNSDGSLRDAETMLDQ-LSLLGK-KITPSLVNDL--VGVVSE EKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLAD- ---PTCGGEGIGGRN---ITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALL QLGSGHNSEMIQSRS--SSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRG SRKTLDLRTASGHSSPQGVVSVSSRMRAND---NLKHG-E CRSVDRVLQDSAQ--- -RSNSSELRPMTNDGVQTFNEGYYIAFIAFEGS--- DIKSRAQRF---TSS- -IRNSMETV--LRCNVEVRIGLM--PE--LLAGGLKRE--EDLD-ERDEFD-ALSC STNSDRLKGIRNP-SRNLNYSEEIEKKLEKFSCASASGGLQSCTTEGNTGMHRTRGKEVS VEQAKA---VTVEEQRLESAWLQAVEKH---APGILNQMRPE---RNQ VVPRISGEQYHR-MPETDTVFPSRQV-DKELS NGLKSLNIGSHG-LR--QNGQMENGYAISPSL-LHSNNH-LANCDNE-SVVSEPGA PGCHGLFPCWKTEK---SKRRKKKACPLQTLL KSFVQRRFKTRYSCLPRSRAHIPK---F REFDGLPWCTSQPIQFMNL >gi|147856456|emb|CAN80768.1|	  785 residues, 50 /line  hypothetical protein [Vitis vinifera] MV--VMDPSNFHLQ-- KKQL TQIRK-AARVLRDPGTTSSWRSPLSTAR-SLSLSAATPPP P-QPPPPPPRPP-EESKRVFLYNWRSASQKAKSSVNGE--NEDDEDGV DGSSVDDSLSDWRNGVDSKSDTYIGGRRHRR--HHASMIFRCRDANLVAMGRPSGIKKKK GSKNVHSIALL-RHQQQQQQQQLNTAR--SGNSKRLL--EGILGRDDSVEQS DDTEEYYNSEDFRRI---CEASPLLSRLRQRNWSRSSSRL--LR-SKRKDD- SSYS-YSTPALSTS-- SYNPYGNRNPSTVESWD--GTTASLHDGDDEV-DDQLDLPGRQGCGIPCYWSRRST PRHRG---ICGSGSC-DSPSL-SDTIRRKGSSMLCGSQTIYPRR-HGLPLGS-KKR --RSVSMTPQGLLPLLTNSCD-GHGGSSMGTGRSDDELSTNFGELDLEALSRLDGRRWSS -SCRSQE-AMELVALNGE-REEEGSPENVRSLSQKYRPMFFDELIGQNIVVQSLVNAISR GRIAPVYLFQGPRGTGKTSTARIFTAALNCL-AVGETKPCGICRECSDFISG KSRHFREIDGTNKKGMDRMRY-LLKTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKF LEEPP-PQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGDIVARLRKISDDENLDVESD ALELIALNADGSLRDAETMLDQ-LSLLGK-RITTSLVNDL--VGVVSD EKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVD- ---AQQSDSFFGGRS---REYNPLDY--

--D--IVVSFKVKL--LWPNIL--

-DLYF---

--- >gi|30683811|ref|NP_172898.2|	  1116 residues, 50 /line  DNA polymerase-related [Arabidopsis thaliana] -MSGLR--ISDPSKLHL--- KKEL THIRKVASKGLRDPGTTSSWKSPLTSSRFV--VEPPASNNVEI-LSNNQLDSQF-- -PSSRVFGNNGK-EKEKKVFLYNWKTQRTS--SEKT---EGEDETSWI QASLNDDDDDD-DDVSDARNGGDSCLEETRSASM---I-RKSGFIKKK SKELDLSIGRKSTAK---ARNFPSHHLHVASGLSVVRDES DETEDFSNSENFPTKVSSPLLLKLKRKNWSRSSSKF--LRGTSKRED- SSHTCNSTPALSTS-- SYNMYGIRNPSTVGSWE-DGDDELDDDNLDFKGRQGCGIPFYWTKRNL -KHRG--GCRSCCSPSF-SDTLRRKGSSILCGSQSVYRRH--RHSSGRFNKQ --KLALRSAKGVLPLLKYGGD-SRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGRRWSS -CCKSQD-GEREEE-EEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKK GRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLG KSRDLLELDAGKKNGAEKVRY-LLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKF LENPL-QKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQ ALDLIALNADGSLRDAETMLEQ-LSLMGK-RITVDLVNEL--VGVVSD DKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYKALD- ---EKYSEAFLDRRN---LTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLL QLGSMPSPGTTHTGS--SRRQSSRATEE---SISRE--VI AYKQRSGLQCSNTASPTSIRKSGNLVREVK---LSSSSSE VLESDTSM--ASHDDTTAST-MTLTCRN SEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEG--- EIKARAERF---VSS- -ITNSIEMV--LRRNVEVRIILL--SE--TE-LL-N -SKQTRQIAVT-TSSYTESGNEIP MKRIEAIIQEQRLETEWLQK---TPGSQGRLKPE---RNQ ILPQ-EDT NGVKVLKICEMGEFQENQSGKRMEHCPVSPSL-LHNSNF-TNNKDNLG-YESESGR GVCSLLF-CWNTQK---SPRRTK---IKGTSM RS--RRSRERRFSLFSACAR---P R-K >gi|7262689|gb|AAF43947.1|AC012188_24	  1071 residues, 50 /line  Contains similarity to DNA Pol III Gamma and Tau from Chlamydia trachomatis gb|AE001306.1 and contains an AAA (ATPase) PF|00004 domain. [Arabidopsis thaliana] -MSGLR--ISDPSKLHL--- KKEL THIRKVASKGLRDPGTTSSWKSPLTSSRFV--VEPPASNNVEI-LSNNQLDSQF-- -PSSRVFGNNGK-EKEKKVFLYNWKTQRTS--SEKT---EGEDETSWI QASLNDDDDDD-DDVSDARNGGDSCLEETRSASM---I-RKSGFIKKK SKELDLSIGRKSTAK---ARNFPSHHLHVASGLSVVRDES DETEDFSNSENFPTKVSSPLLLKLKRKNWSRSSSKF--LRGTSKRED- SSHTCNSTPALSTS-- SYNMYGIRNPSTVGSWE-DGDDELDDDNLDFKGRQGCGIPFYWTKRNL -KHRG--GCRSCCSPSF-SDTLRRKGSSILCGSQSVYRRH--RHSSGRFNKQ --KLALRSAKGVLPLLKYGGD-SRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGRRWSS -CCKSQD-GEREEE-EEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKK GRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLG KSRDLLELDAGKKNGAEKVRY-LLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKF LENPL-QKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQ ALDLIALNADGSLRDAETMLEQ-LSLMGK-RITVDLVNEL--VGVVSD DKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYKALD- ---EKYSEAFLDRRNCEYLKLQMTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLL QLGSMPSPGTTHTGS--SRRQSSRATEE---SISRE--VI AYKQRSGLQCSNTASPTSIRKSGNLVREVK---LSSSSSE VLESDTSM--ASHDDTTAST-MTLTCRN SEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEG--- EIKARAERF---VSS- -ITNSIEMV--LRRNVEVRIILL--SE--TE-LL-N -SKQTRQIAVT-TSSYTESGNEIP MKRIEAIIQEQRLETEWLQK---TPGSQGRLKPE---RNQ ILPQ-EDT NGVKVLKICEMGEFQENQSEDMNQN-QG-EE-

-FAVCFSVGTHKSLQE---E P-K