At2g03390.1/MSA

>gi|42568906|ref|NP_178438.2|	  330 residues, 50 /line  uvrB/uvrC motif-containing protein [Arabidopsis thaliana] ---MVQSQSLSTLTICGSVKVSS- LLRNRLNSVK-- -ASSLIGDRCVSCQFL---RKSPSFRSHWKSLKQRNLLR- -VEARWPFQGGGEQGL DPSSERSESANEDILIFFFQLDLATRVQ YAMN---LEQYD IAQQLREKLTEV-EEESIRLQEGKRGSSAKSEAQ-- -DKGISIIRLRADLQNAIDSEDYG LAAKLRDEIS---KLEA--ESLAVSAKA-LAFEKAEYAFRLGQK LRHKTFGYRAVVCGMDPICSESSSWMEAAEV-EKLPRGSNQPFYQVLVDVRTHPDL--LV AYVAEDNLLAPEKPDKERFD--HPYISFLYYG---ADTAGD--FIPVK QLREK--- ---Y NRP-

RHEV PFDSQDED-- >gi|109098902|ref|XP_001082474.1|	  477 residues, 50 /line  PREDICTED: similar to F-box only protein 21 isoform 2 isoform 1 [Macaca mulatta]

MKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSE ---HVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNN LKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHPS LAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIP ISMSLLYLTIARQLGVPLEPVNFPSHFLL-RWCQ--GAEG ---EGI-- -DQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKVLDILQHI---QTL DPGQHGA-VGYLVQHTLE---HIERKKEEVGVEVKLRSDEKHRDVCYSIGLI MKHKRYGYNCVIYGWDPTCMMGHEWIRNMNV-HSLPHGHHQPFYNVLVE-DG--SC RYAAQENLEYNVEP--QEIS--HPDVGR-YFS---EFTGTH--YIPNA ELEIR--- ---Y PED-

LEFV YETVQNIYSAKKENID-E >gi|109497446|ref|XP_001080075.1|	  368 residues, 50 /line  PREDICTED: similar to F-box only protein 21 [Rattus norvegicus]

---MEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLTRRTGIP ISMSLLYLTIARQLGVPLEPVNFPSHFLL-RWCQ--GAEGATL-DIFDYIYIDAFG KGKQLTVKECEYLIGQHVTAA-LYGVVNVKKVLQRMVGNLLSLGKR-EGI-- -DQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKVLDILQHI---QTL DPGQHGA-VGYLVQHTLE---HIERKKEEVGVEVKLRSEEKHRDVCYSIGLV MKHKRYGYNCVIYGWDPTCMMGHEWIRNMNV-HSLPHGHHQPFYNVLVE-DG--SC RYAAQENLEYNVEP--QEIS--HPDVGR-YFS---EFTGTH--YIPNA ELEIR--- ---Y PED-

LEFV YETVQNIYSAKEDTA--E >gi|125849130|ref|XP_696130.2|	  480 residues, 50 /line  PREDICTED: similar to mKIAA0875 protein, partial [Danio rerio]

KSLTLKYYAKKILYFFRQQNILRN LKVFLERPPEQQSALEGAVLVDQYCNPLTDVTFESISAQVEEITDKVKKCLRAQNAAHPS LRAGQGECFVLEDFEFQRQVICAVNTVLYEQLQYKGNERDYYNPLNSYIHQVLLRRTGIP ISLSVLYMTLARKLGVPLEPVNFPNHFLL-RWCQ--NQRRCG--DIYDYIYIDAFG NGKQLAAKECEILIKHQATAD-YYSAISTSELLLRMVGNLLNIGMRGEGN-- -EKSYQLLRDSLDLYLSINPDNVQYLLLQARLYFHLGIWPEKVLDILQHI---QAL DPSQHGA-VGYLVQHTLE---HIQHKRHPVEPEVKRRSAPEHRDVQFSTGLI MKHKRSGYNCVIYGWDPKCTMSQEWINTMRV-HQLSKGADQPFYNVLVQ-DG--TC RYAAQENLEPHSAP--LEIA--HPEIGR-YFN---EFSETH--YISNE ELQAR--- ---Y PED-

MCKT NRTVEELYHSLTPNSGQSPEPTANFQDHDLLD-P >gi|47221488|emb|CAG08150.1|	  427 residues, 50 /line  unnamed protein product [Tetraodon nigroviridis] LTDLPTELLEHILCF---PVLQHIDICNVSCC--CKRLHDVCHGRGKV WGNQYKLRWPRLQRFYRPNESWDWLSEYRARHKVGTQIRRTVESISKRFFTE VVSQVLGDSFAEIESLGMPEHFCEDELLFILNSDKRKNLTLKYYAKKILYFLRQQNILRS LKSFLERPAEQQSALEGVTSE---

DIFDFVYIDAFG KGKQLTAKECEYLIGHQVTAD-YYSAISTNELLLRMVGNLLNIGKRGEGN-- -EKSYQLLRDSLDLYLTINPDNVQYLLLQARLYFHLGIMARKV- -QHTLE---HIQHKKHPAAPEVKLRSSPEHAEVQYSVGLI MKHKRSGYNCVIYGWDPKCTMNQEWITTMRV-NLLPNGPQQPFYNVLVQ-DG--TC RYAAQENLEPHSAP--MEIG--HPEVGR-YFS---EFANSH--YAANE ELQAR--- ---Y PED-

TGVT LGTVRRLYH- >gi|115475007|ref|NP_001061100.1|	  334 residues, 50 /line  Os08g0172200 [Oryza sativa (japonica cultivar-group)] -MQGIFACGSISSAHGSCFRPACL AVDDL---RLFYKINSVT-- -CGAYSWRWCVKKLHM---RTNRRQMGTTVR- -TNARWLFGGDGRSSS NARMERSESANEDILIFYFQLDLQTRIQ YALN---IEQFD VAKQLREKLTEI-ETVIIRQREAKRGSS-KTEAQ-- -DKAINLLRVRADLQKAVDSENYA LAAALRDEIA---KLET--ESLAVSAKA-LAYQNVKYAFRLGQK VRHKVHGYRAVICGMDHVCCESKSWMETANV-ENLSKGPNQPFYQVLVDVYADPEL--LV AYVAEENLAEAEIPEKGRFD--HPYIEFLFFG---EDTAGD--FIPIK QLREK--- ---Y DQP-

RYEA SGDEDDDDGSTD-S >gi|125527819|gb|EAY75933.1|	  275 residues, 50 /line  hypothetical protein OsI_003780 [Oryza sativa (indica cultivar-group)]

-MGTTVR- -TNAKWLFGGDDRSSS NARLERSESANEDILIFYFQLDLQTRIQ YALN---IEQFD VAKQLREKLTEI-ETEIIRQREAKRGSS-KTEAQ-- -DKAINLLRVRADLQKAVDSENYA LAAALRDEIA---KLET--ESLAVSAKA-LAYQNVEYAFRLGQK VRHKVHGYRAVICGMDPVCCESKSWMETANV-ENLSKGPNQPFYQVLVDVYADPEL--LV AYVAEENLAEAEISEKGRFD--HPYIEFLFFG---EDTAGD--FIPIK QLREK--- ---Y DQP-

RYEA SGDEDDDDGSTD-S >gi|22136040|gb|AAM91602.1|	  138 residues, 50 /line  unknown protein [Arabidopsis thaliana]

---MYYLSACLTLVYI---H

--NEELMLVSF-

RLGYRAVVCGMDPICSESSSWMEAAEV-EKLPRGSNQPFYQVLVDVRTHPDL--LV AYVAEDNLLAPEKPDKERFD--HPYISFLYYG---ADTAGD--FIPVK QLREK--- ---Y NRP-

RHEV PFDSQDED-- >gi|4335759|gb|AAD17436.1|	  131 residues, 50 /line  unknown protein [Arabidopsis thaliana] ---MVQSQSLSTLTICGSVKVSS- LLRNRLNSVK-- -ASSLIGDRCVSCQFL---RKSPSFRSHWKSLKQRNLLR- -VEARWPFQGGGEQGL DPSSERSESANEDILIFFFQLDLATRVQ

---VKTKC-RVF -ISFKMVANGFD

-VL-

QY-- -- >gi|116509905|gb|EAU92800.1|	  345 residues, 50 /line  predicted protein [Coprinopsis cinerea okayama7#130]

MSLIHVFVSLCRQIGIQAYPINFPGTIIA-YVP---TG--SDSPPLIVNLWT GNAENAVMNNRPEWQSDAAFP-FPVFPGPNDAILRPCTNPVPMLKRSSYNILN--- -SIQVDPTIDSHDRQAAIMAVLYVGLVLTDDTFVYRNLSNLPLVDCLILY---RNL LPKLNDEHQAAFNEHCVK---AIQQEESKIAALDAPKRRASSSRPKYFVGMA MNHLKYNYRGVIFGWTPKCEAPEEWIENMDV-DSLAGGRSQPFYHVFSVNELNPRSLLNT YYVAEENIKPRSLD--AELGEILLNHIPDLPR-YFGKVEFPRGKEGFGR--FVPSP EMSLE--- ---Y PDE-

IAYG QEWARK-WKEENRLSG--QLGSSDAV >gi|115403031|ref|XP_001217592.1|	  491 residues, 50 /line  conserved hypothetical protein [Aspergillus terreus NIH2624] MTCPISLLALSIRIEKFRTIIAYGYDIKDALLQNTQADSSVD-DYLARSYYAKELL NCLHRSIAVSEWAKIRNGET-VPLDRALGAFDLFVPESGYGSLDEISNTLEGIARK FLMHHPDIHRLTCRAKAKAIAAYLKANDL-TG IKNGREYDTLQHNFL-GIALKDP- --EHNSLP LISAAIYCYVAQKFGLDAHPCGFPFHVHV-IVKPPIGFDIDGNALGPGIESVPIYMDPFR SDAETHVASLQHQLNFLGLSVAEQSPYLNESWTPEIVIRCSTNIMSQLRRLSEGASAHMS VENILSAKYAALWSAILLLGPSRPAEFSHYMPLF-MELYAKEFPSDTYLIERHI---A-- -PLFHGTLE---HAHILE-CLHVMRAVDEMPKQVK-RRNPGHMSVKYRVGQV FRHRRYNYVGIIIGWDTECDAGEQWMRRMGV-DRLAGGRHQSFYHVLVEDRS---V RYVAEENIWP-TAP--RLADM-PRDLLETAGK-HFK---RWDEEN--HVFIS NVKDE--- ---Y PDD-

-- >gi|67904144|ref|XP_682328.1|	  477 residues, 50 /line  hypothetical protein AN9059.2 [Aspergillus nidulans FGSC A4] ---MSQTGRIEKFRSIVSFGYDAKDTLLRNISIDSSAE-DYLARRYYARALL TSLHRTIAIPAWASLRDGNE-ISLANALGAFDLFIPESGFGNFDEISARLNQIL-- -SG-CLLEFPDIQNLSPRRKASAIAAYLRSHNM---

-TGIGPGREYHCLE---HNFLGIALNDP--AHNSLP LISAAIYCHVAQMLGLDARPCGFPFHVHV-IVIPPSGFDIDGNPITT--QGEPIYMDPFR SDQETPASDLRTQLNFLGASPIEQVAFMGESETSEIVLRCSKNILNSIQRRNQSSSI--- --DAVCARYAALWSSLLLSNHLRPAELQHHLLWL-MELVATDFPCDIHLVERYI---A-- -SLFRGTPE---VEHILE-SLHVIRAVDMIPKQVKR-RSFEHKSVKYHIGQV FRHRRYNYTAIITGWDAECGAGEQWMRRMGI-DHLQSGRHQSFYHVIVEDKS---V RYVAEENIQLISPT--VSEL--SPTLVAVAGK-YFK---RWDSSS--REFVS NIKDE--- ---Y PDD-

-- >gi|114798382|ref|YP_760504.1|	  150 residues, 50 /line  hemimethylated DNA binding domain protein [Hyphomonas neptunium ATCC 15444]

---MTSRRGRTA

WLKDIFRKRVRPAEADPLLL--TDAVDTRYFY -NAISRHEARFQIGQV VRHKLFPFRGVIFDVDPQFANTDEWYDSIPE--EVRPRKDQPFYHLFAENDR--TH--YI AYVSEQNLIPDDSD--VPLS--HPDISD-WFT---MNGSGT--YELKK EATN

-- >gi|114704736|ref|ZP_01437644.1|	  143 residues, 50 /line  hypothetical protein FP2506_07366 [Fulvimarina pelagi HTCC2506]

---MSGRKAGTASAPKCVRFLRAGPELG

--YCGRRNGVEFSMQTARFFIGQI VKHRVYPFRGVIFDVDPVFDNTEEWYEAIPA--EVRPRKDQPFYHLFAENAE--TE--YV AYCSEQNLVPDESG--QPVR--HPQIRE-MFD---GPFEGA--YKLKA PIHN

-- >gi|13470730|ref|NP_102299.1|	  174 residues, 50 /line  hypothetical protein mlr0512 [Mesorhizobium loti MAFF303099] --MVLQHSQAAYEN-PCGGS SDL-ADFIATSRHQSKPLRRILRSLKALKRFGIE--

-LTRSL---R-- --QIKSRNSVVSTMKTAKFAIGQV VRHRLFPFRGIIFDVDPQFANTDEWYEAIPA--DVRPRKDQPFYHLLAENSE--TE--YI AYVSEQNLLEDRSG--EPVR--HPQIKE-MFD---KRPDGR--YEPKR QSRH

-- >gi|148556791|ref|YP_001264373.1|	  130 residues, 50 /line  hemimethylated DNA binding protein [Sphingomonas wittichii RW1]

---MIEKSVSIPAAAGAL--

-HQG IISPSISHARFSIGDV VRHRMFEFRGVVFDVDPVFANSEEWYQAIPE--DMRPAKEQPFYHLFAENSD--SS--YI AYVSQQNLVHDESD--ELVD--HPAIAG-LFD---SYADGR--YQLRR EHRQ

-- >gi|50744786|ref|XP_419873.1|	  239 residues, 50 /line  PREDICTED: hypothetical protein [Gallus gallus] ---MPRISIAAALQ-ICALL AALPAQYYISQWYGTDPAQR-LQMTKRLFACGSSLKKS-YLSLDLWADRLK-

---LWLSEARQDEWSKSERAKLVN--IIEEERRNWYYGEKKI---K-- -SANNEAEN---HSYFAASPHV---HSPKPESIQFSVGQV IVHKRFGYSGVIVGWDVKAKAPEEWLQHKYP-PEKQDVKDTPHYRILINNASGFGK--ST AYVPEEEIKT-TVG--LQVH--HPDVKV-YFC---GYDGSK--YILQP WLRDI--- ---Y PHD-

-- >gi|118596562|dbj|BAF37938.1|	  226 residues, 50 /line  Similar to Tetraodon protein product CAG00085 [Oncorhynchus mykiss]

MPQLTVATILQLTLLLSALPAQYLISRWT--- ---GASVAQRYHATKRLLGMWG-- ---EWRKSYLNTTVWTEWIADLMDRI---TML VGGEEE-GEVPGESPALEVMLQDNDLGFF---GASRSV---RRPRPPFVFLRVGDV VMERNGHMIGVIVSWDPELRAPPEWMSRLH-PNEEVNAENTPHYKVLFSGPGPSSL--LV GYLPQTRLERVTGT---RPE--IPTLEQ-YFT---HFDGER--FIMQP WLQEI--- ---F PED-

-- >gi|47222651|emb|CAG00085.1|	  145 residues, 50 /line  unnamed protein product [Tetraodon nigroviridis]

---MIFDNDQGFF---GASKAV---RSPRPPFVFLRVGEV VMETKGHMVGVVVSWDPELRAPQEWIDRVYSISEGPKAENTPHYKVLFSGPGQSSV--II GYLPQTQLERISGM---RPD--IPTLEN-YFT---HYDGER--FVMQP WLREL--- ---F PED-

AVEDDEPFPW--

-- >gi|39581485|emb|CAE68015.1|	  487 residues, 50 /line  Hypothetical protein CBG13628 [Caenorhabditis briggsae]

--LT MKKDSD-AEA-AESKAMEDETNPDGNGAY---GMGRYL---RQ-RAPEVEFRVGDV VYHKKLGFRGLIIGWDELAIAPEKFLKVAHGDNKASHFATQPNYAILIDTRDRFTP--QM SYVVQENIQLDKGTIW--HPLVEK-FFD---GFDEKRLKFFSAK MIPRCLATRFYSNSAQKPRKKVDCAVYGCGLSASGALAIPKLIQNSTDDVTASEAKYPKR ITYFNTKSIKNVTSGFGFSLFASENRLYGAGINNRFQIGGQLTDPSKFQDYYISAKKINI PAEEILEISSGRAHSLIRTEKGVFAIGDNNFGQCGRDPTVLEHIVGSDDSPLQPLTPPTS NPIVSIHCSLDTSFIVDSEGKVFSFGLGEDGQCGNESYGIQWNPSSVKGDLEGVRIQKIA GSTDTVMALSDEGEAFVWGQTEYGQAVGATDQIQLNVSRHLNLSSTIGPISSIATTQSSV IAQNKNGEVFVWGVGVLGMGPEAEVLKRPTRMDQPLFDGKKV-- -- >gi|71992585|ref|NP_001021670.1|	  200 residues, 50 /line  Temporarily Assigned Gene name family member (tag-229) [Caenorhabditis elegans]

---MEIKPELIFIGILILVPAQWLLSPSE--- ---TGHLKYR-- ---MNSLIFTLKQYIPSFMT SSSDSE-AEA-AESSAIMAEMNPEGNGAY---GMGQYT---RH-RAPHVEFRVGDV ITHTKLNFRGVIIGWDEHAIAPEKFLKVAHGENK--NYATQPNYAVLIDTRDRLTP--QL SYIVQENLEIDKGTVM--HPLVDK-FFD---GFDEKRQKYIMRP LYKQW--- ---Y PDD-

-- >gi|7509185|pir||T26319	  522 residues, 50 /line  hypothetical protein W09G3.3 - Caenorhabditis elegans

--MT SSSDSE-AEA-AESSAIMAEMNPEGNGAY---GMGQYT---RH-RAPHVEFRVGDV ITHTKLNFRGVIIGWDEHAIAPEKFLKVAHGENK--NYATQPNYAVLIDTRDRLTP--QL SYIVQENLEIDKGTVM--HPLVDK-FFD---GFDEKRQKLVTSK MISRWQTTRFLSNSAGKTRKNVDCAVYGCGLSASGALAIPKLVANS-DDVTAGEARFPKR IAYFNTKSIKFISSGFGFSLFASKNRLYGAGINNRFQIGGQLTNINKYQDYYISAKKINI PGDEILEISSGRAHSLIRTNLGVFAIGDNNFGQCGRNPENMDYVVGSEESPLLPLSFPTS EPIISIHCSMDTSFVVDSSGAVFSFGLNEDGQCGNEAYGIQWEPAKVRGDVEGSKIQKVS GSTDTLLACSENGEIFIWGQTEYGQAAGATDEIQLNTSRH--VANSLGPIICVDSTQSSV VARNSRGNVFVWGVGVLGMGPEAESLKTPTQMDQPLFDGKMVIYENFHVEIRTQRPLLSL FMWKLDRF---RENLNFCAFWRRFG- >gi|89360906|ref|ZP_01198723.1|	  179 residues, 50 /line  Hemimethylated DNA-binding region [Xanthobacter autotrophicus Py2]

-MGSHDKARAKPATGAPAPDG--- ---TS--- ---IASAPEADAMTQD AKAGAP-AGA-AEGKSIAA--APEGAAALPLSGAAADF---HS-TMREGKFRIGEV VRHKHFPFRGVVFDVDPVFDNTEEWWLSIPEE--IRPHKDQPFYHLLAENAD--SE--YV AYVSEQNLERDFSE--EPVR--HPKVNE-ALT---DDGAGG--WRVRR DLIN

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