At2g10550.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

=
=========================================

Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g10550-c1pia_.pir.txt

=
=========================================

Assigned types to 170 residues in Sequence 2-10550, 20 remain unknown Assigned types to 169 residues in Sequence c1puia_, 21 remain unknown

=
=========================================

Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

=
=========================================

Translated sequence file At2g10550-c1pia_.pir.txt into sequence alignment.

=
=========================================

>1PUI.pdb Made from 2613 ATOM records in 1PUI.pdb FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQQLINLFEVADG KRLVDLPGYGEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM IEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS SLKKQGVDKLRQKLDTWFSVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSA LNTLTNQLINLFEVADGKRLVDLPGYRKWQRALGEYLEKRQSLQGLVVLM DIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV LAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE

=
=========================================

Best alignment: 1PUI.pdb    9  RHLPSDTGIEVAFAGRSNAGKSSALNTLTN    38 + L +     +F   S AG+S  L ++ N 2-10550     17  KRLKASPSSSSSFPAVSVAGRSRDLGSVAN    46

=
=========================================

Highlighted IDENTICAL residue THR  25  index1   15  path   23  %Seq 100.00 Highlighted IDENTICAL residue GLY  26  index1   16  path   24  %Seq 100.00 Highlighted IDENTICAL residue ALA  30  index1   20  path   28  %Seq  50.00 Highlighted IDENTICAL residue PHE  31  index1   21  path   29  %Seq  50.00 Highlighted IDENTICAL residue ARG  34  index1   24  path   32  %Seq 100.00 Highlighted IDENTICAL residue ALA  37  index1   27  path   35  %Seq 100.00 Highlighted IDENTICAL residue GLY  38  index1   28  path   36  %Seq 100.00 Highlighted IDENTICAL residue LYS  39  index1   29  path   37  %Seq 100.00 Highlighted IDENTICAL residue SER  40  index1   30  path   38  %Seq 100.00 Highlighted IDENTICAL residue LEU  43  index1   33  path   46  %Seq 100.00 Highlighted IDENTICAL residue ASN  48  index1   38  path   51  %Seq 100.00 Highlighted 11 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g10550-c1pia_.pir.txt.1PUI.pdb.conservation.pml

=
==================================================================

The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g10550-c1pia_.pir.txt PIR amino_acid 1PUI.pdb _ 100.0 BLOSUM62.dat

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@