At2g07090.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g07090-1ic2_A.pir.txt

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Assigned types to 159 residues in Sequence 2-07090, 0 remain unknown Assigned types to 63 residues in Sequence 1ic2_A, 96 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g07090-1ic2_A.pir.txt into sequence alignment.

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>1IC2.pdb Made from 2492 ATOM records in 1IC2.pdb MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL KGTEDELDKYSESLKDAQEKLELADKKATMDAIKKKMQMLKLDKENALDR AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL ELADKKMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELV ALQKKLKGTEDELDKYSESLKDAQEKLELADKKATMDAIKKKMQMLKLDK ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK DAQEKLELADKK

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Best alignment: 1IC2.pdb   20  DRAEQAEADKKAAEERSKQLEDELVALQKKL    50 +  + +A+      + ++L++E +A +K+L 2-07090    91  NEISKVKAETNEMLNQIQELKEEAIARKKEL   121

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Highlighted IDENTICAL residue LEU  39  index1   39  path  110  %Seq 100.00 Highlighted IDENTICAL residue LYS  49  index1   49  path  120  %Seq 100.00 Highlighted IDENTICAL residue LEU  50  index1   50  path  121  %Seq 100.00 Highlighted 3 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g07090-1ic2_A.pir.txt.1IC2.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g07090-1ic2_A.pir.txt PIR amino_acid 1IC2.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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