At2g06520.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g06520-2hayA0.pir.txt

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Assigned types to 116 residues in Sequence 2-06520, 90 remain unknown Assigned types to 217 residues in Sequence 2hayA0, 2 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g06520-2hayA0.pir.txt into sequence alignment.

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>2HAY.pdb Made from 7050 ATOM records in 2HAY.pdb IHHQIQQALHFRTAVRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFV VLDNKPIKEEIKPFAWGAQYQLETASHFILLIAEKHARYDSPAIKNSLLR RGIKEGDGLNSRLKLYESFQKEDDADNPRALFDWTAKQTYIALGNTAALL GIDTCPIEGFHYDKVNHILAKHNVIDLEKEGIASLSLGYRLRDPKHAQVR KPKEEVSVVKDQTIHHQIQQALHFRTAVRVYKEEKISDEDLALILDAAWL SPSSIGLEGWRFVVLDNKPIKEEIKPFAWGAQYQLETASHFILLIAEKHA RYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQKEDDADNPRALFDWTAK QTYIALGNTAALLGIDTCPIEGFHYDKVNHILAKHNVIDLEKEGIASLSL GYRLRDPKHAQVRKPKEEVSVVKTIHHQIQQALHFRTAVRVYKEEKISDE DLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEIKPFAWGAQYQLETAS HFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQKEDDAD NPRALFDWTAKQTYIALGNTAALLGIDTCPIEGFHYDKVNHILAKHNVID LEKEGIASLSLGYRLRDPAQVRKPKEEVSVVKADQTIHHQIQQALHFRTA VRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEIKPF AWGAQYQLETASHFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLK LYESFQKEDDADNPRALFDWTAKQTYIALGNTAALLGIDTCPIEGFHYDK VNHILAKHNVIDLEKEGIASLSLGYRLRDPKHAQVRKPKEEVSVVK

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Best alignment: 2HAY.pdb   74  TASHFILLIAEKHARYDSPAIKNSLL    99 TAS I  IAE      SP++KN LL 2-06520     63  TASMVIPEIAEAAGSGISPSLKNFLL    88

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Highlighted IDENTICAL residue HIS  81  index1   77  path  148  %Seq 100.00 Highlighted IDENTICAL residue LEU  84  index1   80  path  151  %Seq  50.00 Highlighted IDENTICAL residue LEU  85  index1   81  path  152  %Seq  50.00 Highlighted IDENTICAL residue ALA  87  index1   83  path  154  %Seq 100.00 Highlighted IDENTICAL residue ALA  91  index1   87  path  158  %Seq 100.00 Highlighted IDENTICAL residue TYR  93  index1   89  path  166  %Seq 100.00 Highlighted IDENTICAL residue ASN 100  index1   96  path  173  %Seq 100.00 Highlighted IDENTICAL residue LEU 103  index1   99  path  176  %Seq 100.00 Highlighted 8 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g06520-2hayA0.pir.txt.2HAY.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g06520-2hayA0.pir.txt PIR amino_acid 2HAY.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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