At2g02090.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g02090-1z3i_X.pir.txt

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Assigned types to 763 residues in Sequence 2-02090, 27 remain unknown Assigned types to 507 residues in Sequence 1z3i_X, 283 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 234 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 235 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 236 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 237 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 265 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 266 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 267 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 268 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 304 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 305 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 431 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 432 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 433 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 434 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 435 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 436 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 437 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 438 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 439 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 440 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 441 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 442 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 443 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 444 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 445 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 627 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 682 All residues are positively and negatively charged

Translated sequence file At2g02090-1z3i_X.pir.txt into sequence alignment.

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>1Z3I.pdb Made from 5052 ATOM records in 1Z3I.pdb LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDP VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI WTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGS KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDE GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGIL GTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTS DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSL SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGK MLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP ANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD EEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDS DCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR

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Best alignment: 1Z3I.pdb   49  DPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT    98 D    +L+P+Q  GV FL   +  + IE   G I+ADEMGLGKT+Q IT 2-02090    206  DSDFQPILKPYQLVGVNFLL-LLYKKGIE---GAILADEMGLGKTIQAIT   251

1Z3I.pdb   99  LIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDG   148 + L + + D  P     +VV P+S++ NW  E+ KW       +   G 2-02090    252  YLTLLSRLNNDPGPHLVVCPASVLENWERELRKWCPS-FTVLQYHG   296

1Z3I.pdb  149  GSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKG   191 ++   S+ +N +S+ G   P  +L++ Y  F  H+E       VL + 2-02090   297  AARAAY-SRELNSLSKAGKPPPFNVLLVCYSLFERHSEQQKDDRKVLKRW   345

1Z3I.pdb  192  KVGLVICDEGHRLKNSDNQTYLALNSM--NAQRRVLISGTPIQNDLLEYF   239 +  V+ DE H LK+ ++  +  L S+  NA +R++++GTP+QNDL E + 2-02090   346  RWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELW   395

1Z3I.pdb  240  SLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA-AGEQKLQELI   288 SL+ F+  I  T     K+     L   D +   + ++  G   L+ L 2-02090    396  SLLEFMLPDIFTTENVDLKKLLNAEDTELITRMKSILGPFILRRLK   441

1Z3I.pdb  289  SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLK-QAKPV   337 S V + L+ +  +    +  K E      +   +       +K  +K + 2-02090   442  SDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSL   491

1Z3I.pdb  338  ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFP--   385 SL         +  T  +K+ NHP LI  +  + E+    A  L P  2-02090    492  NSLAKALPKRQISNYFTQFRKIANHPLLI-RRIYSDEDVIRIARKLHPIG   540

1Z3I.pdb  385  ---QNYSTKAVEPQLSG--KMLVLDYILAMTRTTTSD-   417 S  V  ++ G        L+  Y +  T+ T SD         2-02090    541  AFGFECSLDRVIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLSAKC   590

1Z3I.pdb  417  ---KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSI   452 +V++ S +T LD+ E         Y RLDG+  + 2-02090   591  RTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQV   640

1Z3I.pdb  453  KKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN   502 R IV+ FNN  S  F  +LS++AGG GLNL GA+ +++ D D+NP 2-02090   641  TDRQTIVDTFNNDKS-IFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQI   689

1Z3I.pdb  503  DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE   552 D QA R  R GQ K   I+RL++  T++E I +    K  L + V++ 2-02090   690  DRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESG   739

1Z3I.pdb  553  QDVE   556 V+ 2-02090   740  VHVD   743

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=========================================

Highlighted IDENTICAL residue ASP 140  index1   49  path  206  %Seq 100.00 Highlighted IDENTICAL residue LEU 147  index1   56  path  213  %Seq 100.00 Highlighted IDENTICAL residue PRO 149  index1   58  path  215  %Seq 100.00 Highlighted IDENTICAL residue GLN 151  index1   60  path  217  %Seq 100.00 Highlighted IDENTICAL residue GLY 154  index1   63  path  220  %Seq 100.00 Highlighted IDENTICAL residue VAL 155  index1   64  path  221  %Seq 100.00 Highlighted IDENTICAL residue PHE 157  index1   66  path  223  %Seq 100.00 Highlighted IDENTICAL residue LEU 158  index1   67  path  224  %Seq 100.00 Highlighted IDENTICAL residue GLY 172  index1   81  path  238  %Seq 100.00 Highlighted IDENTICAL residue ILE 174  index1   83  path  240  %Seq 100.00 Highlighted IDENTICAL residue ALA 176  index1   85  path  242  %Seq 100.00 Highlighted IDENTICAL residue ASP 177  index1   86  path  243  %Seq 100.00 Highlighted IDENTICAL residue GLU 178  index1   87  path  244  %Seq 100.00 Highlighted IDENTICAL residue MET 179  index1   88  path  245  %Seq 100.00 Highlighted IDENTICAL residue GLY 180  index1   89  path  246  %Seq 100.00 Highlighted IDENTICAL residue LEU 181  index1   90  path  247  %Seq 100.00 Highlighted IDENTICAL residue GLY 182  index1   91  path  248  %Seq 100.00 Highlighted IDENTICAL residue LYS 183  index1   92  path  249  %Seq 100.00 Highlighted IDENTICAL residue THR 184  index1   93  path  250  %Seq 100.00 Highlighted IDENTICAL residue GLN 186  index1   95  path  252  %Seq 100.00 Highlighted IDENTICAL residue ILE 188  index1   97  path  254  %Seq 100.00 Highlighted IDENTICAL residue THR 189  index1   98  path  255  %Seq 100.00 Highlighted IDENTICAL residue LEU 194  index1  103  path  260  %Seq 100.00 Highlighted IDENTICAL residue VAL 210  index1  119  path  276  %Seq 100.00 Highlighted IDENTICAL residue VAL 211  index1  120  path  277  %Seq 100.00 Highlighted IDENTICAL residue PRO 213  index1  122  path  279  %Seq 100.00 Highlighted IDENTICAL residue SER 215  index1  124  path  281  %Seq 100.00 Highlighted IDENTICAL residue ASN 219  index1  128  path  285  %Seq 100.00 Highlighted IDENTICAL residue TRP 220  index1  129  path  286  %Seq 100.00 Highlighted IDENTICAL residue GLU 223  index1  132  path  289  %Seq 100.00 Highlighted IDENTICAL residue LYS 226  index1  135  path  292  %Seq 100.00 Highlighted IDENTICAL residue TRP 227  index1  136  path  293  %Seq 100.00 Highlighted IDENTICAL residue GLY 239  index1  148  path  306  %Seq 100.00 Highlighted IDENTICAL residue SER 247  index1  156  path  313  %Seq 100.00 Highlighted IDENTICAL residue ASN 251  index1  160  path  317  %Seq 100.00 Highlighted IDENTICAL residue SER 254  index1  163  path  320  %Seq 100.00 Highlighted IDENTICAL residue GLY 257  index1  166  path  323  %Seq 100.00 Highlighted IDENTICAL residue PRO 261  index1  170  path  327  %Seq 100.00 Highlighted IDENTICAL residue LEU 265  index1  174  path  331  %Seq 100.00 Highlighted IDENTICAL residue TYR 269  index1  178  path  335  %Seq 100.00 Highlighted IDENTICAL residue PHE 272  index1  181  path  338  %Seq 100.00 Highlighted IDENTICAL residue HIS 275  index1  184  path  341  %Seq  50.00 Highlighted IDENTICAL residue ALA 276  index1  185  path  342  %Seq  50.00 Highlighted IDENTICAL residue GLU 277  index1  186  path  343  %Seq  50.00 Highlighted IDENTICAL residue VAL 278  index1  187  path  351  %Seq 100.00 Highlighted IDENTICAL residue LEU 279  index1  188  path  352  %Seq 100.00 Highlighted IDENTICAL residue VAL 287  index1  196  path  360  %Seq 100.00 Highlighted IDENTICAL residue ASP 290  index1  199  path  363  %Seq 100.00 Highlighted IDENTICAL residue GLU 291  index1  200  path  364  %Seq 100.00 Highlighted IDENTICAL residue HIS 293  index1  202  path  366  %Seq 100.00 Highlighted IDENTICAL residue LEU 295  index1  204  path  368  %Seq 100.00 Highlighted IDENTICAL residue LYS 296  index1  205  path  369  %Seq 100.00 Highlighted IDENTICAL residue LEU 306  index1  215  path  379  %Seq 100.00 Highlighted IDENTICAL residue SER 308  index1  217  path  381  %Seq 100.00 Highlighted IDENTICAL residue ASN 310  index1  219  path  385  %Seq 100.00 Highlighted IDENTICAL residue ALA 311  index1  220  path  386  %Seq 100.00 Highlighted IDENTICAL residue ARG 314  index1  223  path  389  %Seq 100.00 Highlighted IDENTICAL residue GLY 319  index1  228  path  394  %Seq 100.00 Highlighted IDENTICAL residue THR 320  index1  229  path  395  %Seq 100.00 Highlighted IDENTICAL residue PRO 321  index1  230  path  396  %Seq 100.00 Highlighted IDENTICAL residue GLN 323  index1  232  path  398  %Seq 100.00 Highlighted IDENTICAL residue ASN 324  index1  233  path  399  %Seq 100.00 Highlighted IDENTICAL residue ASP 325  index1  234  path  400  %Seq 100.00 Highlighted IDENTICAL residue LEU 326  index1  235  path  401  %Seq 100.00 Highlighted IDENTICAL residue GLU 328  index1  237  path  403  %Seq 100.00 Highlighted IDENTICAL residue SER 331  index1  240  path  406  %Seq 100.00 Highlighted IDENTICAL residue LEU 332  index1  241  path  407  %Seq 100.00 Highlighted IDENTICAL residue PHE 335  index1  244  path  410  %Seq 100.00 Highlighted IDENTICAL residue ILE 340  index1  249  path  415  %Seq 100.00 Highlighted IDENTICAL residue THR 343  index1  252  path  418  %Seq 100.00 Highlighted IDENTICAL residue LYS 349  index1  258  path  424  %Seq 100.00 Highlighted IDENTICAL residue ALA 369  index1  278  path  455  %Seq 100.00 Highlighted IDENTICAL residue GLN 376  index1  285  path  463  %Seq 100.00 Highlighted IDENTICAL residue GLU 377  index1  286  path  464  %Seq 100.00 Highlighted IDENTICAL residue LEU 386  index1  295  path  473  %Seq 100.00 Highlighted IDENTICAL residue ARG 389  index1  298  path  476  %Seq 100.00 Highlighted IDENTICAL residue THR 390  index1  299  path  477  %Seq 100.00 Highlighted IDENTICAL residue ILE 393  index1  302  path  480  %Seq 100.00 Highlighted IDENTICAL residue ILE 402  index1  311  path  489  %Seq 100.00 Highlighted IDENTICAL residue VAL 406  index1  315  path  493  %Seq 100.00 Highlighted IDENTICAL residue CYS 407  index1  316  path  494  %Seq 100.00 Highlighted IDENTICAL residue LEU 420  index1  329  path  507  %Seq  50.00 Highlighted IDENTICAL residue PHE 421  index1  330  path  508  %Seq  50.00 Highlighted IDENTICAL residue LEU 422  index1  331  path  509  %Seq  50.00 Highlighted IDENTICAL residue LYS 423  index1  332  path  510  %Seq  50.00 Highlighted IDENTICAL residue GLN 424  index1  333  path  512  %Seq  50.00 Highlighted IDENTICAL residue ALA 425  index1  334  path  513  %Seq  50.00 Highlighted IDENTICAL residue LYS 426  index1  335  path  514  %Seq  50.00 Highlighted IDENTICAL residue PRO 427  index1  336  path  515  %Seq  50.00 Highlighted IDENTICAL residue VAL 428  index1  337  path  516  %Seq  50.00 Highlighted IDENTICAL residue GLU 429  index1  338  path  517  %Seq  50.00 Highlighted IDENTICAL residue SER 430  index1  339  path  518  %Seq  50.00 Highlighted IDENTICAL residue LEU 431  index1  340  path  519  %Seq  50.00 Highlighted IDENTICAL residue THR 445  index1  354  path  533  %Seq 100.00 Highlighted IDENTICAL residue LYS 449  index1  358  path  537  %Seq 100.00 Highlighted IDENTICAL residue ASN 452  index1  361  path  540  %Seq 100.00 Highlighted IDENTICAL residue HIS 453  index1  362  path  541  %Seq 100.00 Highlighted IDENTICAL residue PRO 454  index1  363  path  542  %Seq 100.00 Highlighted IDENTICAL residue LEU 456  index1  365  path  544  %Seq 100.00 Highlighted IDENTICAL residue ILE 457  index1  366  path  545  %Seq 100.00 Highlighted IDENTICAL residue GLY 467  index1  376  path  554  %Seq  50.00 Highlighted IDENTICAL residue PHE 468  index1  377  path  555  %Seq  50.00 Highlighted IDENTICAL residue ASP 469  index1  378  path  556  %Seq  50.00 Highlighted IDENTICAL residue GLY 470  index1  379  path  557  %Seq  50.00 Highlighted IDENTICAL residue ALA 471  index1  380  path  558  %Seq  50.00 Highlighted IDENTICAL residue LEU 472  index1  381  path  559  %Seq  50.00 Highlighted IDENTICAL residue ASP 473  index1  382  path  560  %Seq  50.00 Highlighted IDENTICAL residue LEU 474  index1  383  path  561  %Seq  50.00 Highlighted IDENTICAL residue PHE 475  index1  384  path  562  %Seq  50.00 Highlighted IDENTICAL residue PRO 476  index1  385  path  563  %Seq  50.00 Highlighted IDENTICAL residue GLN 477  index1  386  path  569  %Seq  50.00 Highlighted IDENTICAL residue ASN 478  index1  387  path  570  %Seq  50.00 Highlighted IDENTICAL residue TYR 479  index1  388  path  571  %Seq  50.00 Highlighted IDENTICAL residue SER 480  index1  389  path  572  %Seq  50.00 Highlighted IDENTICAL residue THR 481  index1  390  path  573  %Seq  50.00 Highlighted IDENTICAL residue LYS 482  index1  391  path  574  %Seq  50.00 Highlighted IDENTICAL residue ALA 483  index1  392  path  575  %Seq  50.00 Highlighted IDENTICAL residue VAL 484  index1  393  path  576  %Seq  50.00 Highlighted IDENTICAL residue GLU 485  index1  394  path  577  %Seq  50.00 Highlighted IDENTICAL residue PRO 486  index1  395  path  578  %Seq  50.00 Highlighted IDENTICAL residue GLN 487  index1  396  path  579  %Seq  50.00 Highlighted IDENTICAL residue LEU 488  index1  397  path  580  %Seq  50.00 Highlighted IDENTICAL residue SER 489  index1  398  path  581  %Seq  50.00 Highlighted IDENTICAL residue GLY 490  index1  399  path  582  %Seq  50.00 Highlighted IDENTICAL residue VAL 510  index1  419  path  633  %Seq 100.00 Highlighted IDENTICAL residue SER 514  index1  423  path  637  %Seq 100.00 Highlighted IDENTICAL residue THR 517  index1  426  path  640  %Seq 100.00 Highlighted IDENTICAL residue LEU 520  index1  429  path  643  %Seq 100.00 Highlighted IDENTICAL residue ASP 521  index1  430  path  644  %Seq 100.00 Highlighted IDENTICAL residue GLU 524  index1  433  path  647  %Seq 100.00 Highlighted IDENTICAL residue TYR 534  index1  443  path  657  %Seq 100.00 Highlighted IDENTICAL residue ARG 536  index1  445  path  659  %Seq 100.00 Highlighted IDENTICAL residue LEU 537  index1  446  path  660  %Seq 100.00 Highlighted IDENTICAL residue ASP 538  index1  447  path  661  %Seq 100.00 Highlighted IDENTICAL residue GLY 539  index1  448  path  662  %Seq 100.00 Highlighted IDENTICAL residue ARG 546  index1  455  path  669  %Seq 100.00 Highlighted IDENTICAL residue ILE 549  index1  458  path  672  %Seq 100.00 Highlighted IDENTICAL residue VAL 550  index1  459  path  673  %Seq 100.00 Highlighted IDENTICAL residue PHE 553  index1  462  path  676  %Seq 100.00 Highlighted IDENTICAL residue ASN 554  index1  463  path  677  %Seq 100.00 Highlighted IDENTICAL residue ASN 555  index1  464  path  678  %Seq 100.00 Highlighted IDENTICAL residue SER 558  index1  467  path  681  %Seq 100.00 Highlighted IDENTICAL residue PHE 561  index1  470  path  684  %Seq 100.00 Highlighted IDENTICAL residue LEU 565  index1  474  path  688  %Seq 100.00 Highlighted IDENTICAL residue SER 566  index1  475  path  689  %Seq 100.00 Highlighted IDENTICAL residue ALA 569  index1  478  path  692  %Seq 100.00 Highlighted IDENTICAL residue GLY 570  index1  479  path  693  %Seq 100.00 Highlighted IDENTICAL residue GLY 571  index1  480  path  694  %Seq 100.00 Highlighted IDENTICAL residue GLY 573  index1  482  path  696  %Seq 100.00 Highlighted IDENTICAL residue LEU 574  index1  483  path  697  %Seq 100.00 Highlighted IDENTICAL residue ASN 575  index1  484  path  698  %Seq 100.00 Highlighted IDENTICAL residue LEU 576  index1  485  path  699  %Seq 100.00 Highlighted IDENTICAL residue GLY 578  index1  487  path  701  %Seq 100.00 Highlighted IDENTICAL residue ALA 579  index1  488  path  702  %Seq 100.00 Highlighted IDENTICAL residue ASP 586  index1  495  path  709  %Seq 100.00 Highlighted IDENTICAL residue ASP 588  index1  497  path  711  %Seq 100.00 Highlighted IDENTICAL residue ASN 590  index1  499  path  713  %Seq 100.00 Highlighted IDENTICAL residue PRO 591  index1  500  path  714  %Seq 100.00 Highlighted IDENTICAL residue ASP 594  index1  503  path  717  %Seq 100.00 Highlighted IDENTICAL residue GLN 596  index1  505  path  719  %Seq 100.00 Highlighted IDENTICAL residue ALA 597  index1  506  path  720  %Seq 100.00 Highlighted IDENTICAL residue ARG 600  index1  509  path  723  %Seq 100.00 Highlighted IDENTICAL residue ARG 603  index1  512  path  726  %Seq 100.00 Highlighted IDENTICAL residue GLY 605  index1  514  path  728  %Seq 100.00 Highlighted IDENTICAL residue GLN 606  index1  515  path  729  %Seq 100.00 Highlighted IDENTICAL residue LYS 608  index1  517  path  731  %Seq 100.00 Highlighted IDENTICAL residue ILE 612  index1  521  path  735  %Seq 100.00 Highlighted IDENTICAL residue ARG 614  index1  523  path  737  %Seq 100.00 Highlighted IDENTICAL residue LEU 615  index1  524  path  738  %Seq 100.00 Highlighted IDENTICAL residue THR 620  index1  529  path  743  %Seq 100.00 Highlighted IDENTICAL residue GLU 623  index1  532  path  746  %Seq 100.00 Highlighted IDENTICAL residue ILE 625  index1  534  path  748  %Seq 100.00 Highlighted IDENTICAL residue LYS 632  index1  541  path  755  %Seq 100.00 Highlighted IDENTICAL residue LEU 635  index1  544  path  758  %Seq 100.00 Highlighted IDENTICAL residue VAL 639  index1  548  path  762  %Seq 100.00 Highlighted IDENTICAL residue ASP 645  index1  554  path  768  %Seq  50.00 Highlighted IDENTICAL residue VAL 646  index1  555  path  769  %Seq  50.00 Highlighted IDENTICAL residue GLU 647  index1  556  path  770  %Seq  50.00 Highlighted 178 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g02090-1z3i_X.pir.txt.1Z3I.pdb.conservation.pml

=
==================================================================

The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g02090-1z3i_X.pir.txt PIR amino_acid 1Z3I.pdb _ 100.0 BLOSUM62.dat

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@