At2g04270.2/MSA

>gi|30678104|ref|NP_850988.1|	  871 residues, 50 /line  glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana]

--MIMNGKLKS- -RYNYLLKAGYGSSSDVIWRPGPQFSLSVPSSVNQDRKIIIRDSWMSMSISSKSQESYGW GSWIDDAYLFPNCVTPAQSEDECTSADSAIEV-PRTHLND KQVGAESFLCDELAAFSSENSNLSALFS-DNY-QPIEEPWLI-- --QESITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTET -L--LPDGGFFQSESI ---ATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAF VNIGSARHSFMDIKSNREPFIFPPFCDGSK-KQAADGS-- PILSMNDIPAPH EIEHASY- -DFEASSLLD-IDSND-PGESFHDDDDEHENDEYHV--SDHLAGLVNG TVVNHGAVEVGSENGHIPMERGHSADSLDSNAS--VAKAS-KVM-SSK D-N--KWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRI-GVSKKI- SGV-ERTRLKVIAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAA LAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLC NRVELHDKG-IPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDV NGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEE VKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSK IEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILL KVARHFTRGTFEVKPFMDEKTVNERQHQ--VAISLLKKADAIAD

--SSGKKKL-TLIPIKKE--

KTSGKQR--R >gi|114326947|ref|YP_744104.1|	  949 residues, 50 /line  ribonuclease E [Granulibacter bethesdensis CGDNIH1] -MSCHAPQALARIRLRLCVPF---

-ATIHRHNVMPGGARRSRISRVCTGA--

HYSM ---TKKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAF VEYGGNRHGFLAFSEIHPDYYQ-IPVADRQRLLAMQEEEAREEE EAEEAEF--SAA EARRSAS- -RPLNNAR-EVIQA-DSEQPEASD-PQEDGADHGVQ--DE SAAD-FSGEAGDEGSVPASAGEGDDQEESRQASRPARQKEDRERRSPRFLRN Y-K--IQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNSPRGGGVSRKIT SAT-DRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWDDIRDITLR-- SSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRMLMPSHA RKVICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDV NSGRST--KERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERR LKEALKNDRARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVH VLRAIEEEGAR--RRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLF SADTQFSGSQLRIEKIRARAMEDVVRTPLIGVADPQPSVAGDLYDFA- -DASDGFATFE--AAPVAALPVAVQAEPVGTAEEGN NGG--RLP-SAEGDSEPGPD ---DGE---RRRRRRRRRRGN--RRNDGAENG MDARSEQDE---NGNPVEEGEGVRHGDA NTSALPVET-TELTVAGVAS---KETSAETQGDAID-GTQAVSG EF-GDEFAEDSRPRRRGRRGGRGRRQPAQ-ANGHDA ---GEVAYTGPTPADPFGQQPLDVFDVMDGIEQPMIRDGKV--DQGSR SERHPDLVP-EPVVVSEEQAEPYI-APPIQPVVI-- EDTAPR-- ARRGWWKR -- >gi|126461575|ref|YP_001042689.1|	  890 residues, 50 /line  ribonuclease, Rne/Rng family [Rhodobacter sphaeroides ATCC 17029]

---M ---AKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAF VDYGGNRHGFLAFAEIHPDYYQ-IPVADRKALLEEERAYA RAEDDED--HGR SRRRSRP- -APAAAASGDAVQSGDVAGMDVVDLGEETGADALYE--TDGSDA GAADSGQPEAPDADEKPYRAMDHASDGDDEIESVADEDVA--EEIPAPRKPR-SRR Y-K--IQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKIT QAA-DRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRLWEQIRDLTLK-- SVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHA RQVIRYDEP-MPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDV NSGRAT--KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKR LKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQ VLRQLEEEGTR--KRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRV EADPSLSSPDYVIEKFKTATRV---VPEAVKVISGSADLMGAPVD--- -EPEDDWVEEE-PEI--VE- -EAE-EVAEAAEAAPA ---EGQPKKKRRRRRRRRNG---VNGANGSDA QE--NGDEG---DESDEDEGDAADEPEA VEAAAAV---PELAPEAVVSAP-EPAAAEPEPTPAE-PVAAP-- ---AAEEPAAPRKRTRTRKPKVTEEAPAE-AAAEAPA--- ---AEAPAKEPKKP-RTRTSRSRKTAAAA-EAVPAVEVAVT--VDETP AEASLEIA-RTTEAVPETTPE-APAAEAPAAEAPVAETPAPQPEPVAEEA---GEG EDNKPKRR ---GWWSI GR >gi|146276768|ref|YP_001166927.1|	  869 residues, 50 /line  ribonuclease, Rne/Rng family [Rhodobacter sphaeroides ATCC 17025]

---M ---AKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAF VDYGGNRHGFLAFAEIHPDYYQ-IPVADRKALIEEERAYA RAEEDED--HGR SRRRSRP- -APAEAPSADAVQSGDVGGMDVVDLGEETGADALYE--TERGEA --RPEADEA-EKPWKAVDHAAETDDEIESVADEDVA--EEIPAPRKPR-QRR Y-K--IQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKIT QAA-DRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRLWEQIRELTLK-- SVAPAPIYEEGDLIKRSIRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHA RQVIRYDEP-MPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDV NSGRAT--KEGSIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKR LKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQ VLRQLEEEGTR--KRSKEVLLRAPIAVVNFLMNQKREHIAMIEARYGMAVRV EADPSLSSPDYVIEKFKTATRV---VPETVKVISGSADLMGAPVD--- -EPEDDWIEEE-PEVEEAE- -EAV-EAAEPAEAAPS ---EGQPKKKRRRRRRRRNG---ANGATDQTG AEAAESDES---DDSDEDEDETADEGDV PEPAAFV---PEMAPEAVIAEPAAEPV---AE-PVAEP-- EA-VAEEPPAPRKRTRVRKPKVVEESAAA-PAEAAP EAEPKEPKKPSRSRTSRSRKSAAAAEEAAPAVEVAVT--VDEAP AEAALDVVE-TPAEPAPAAPQPEA-APEPQPEPVSGET-D EESKPRRR ---GWWSI SR >gi|77462682|ref|YP_352186.1|	  936 residues, 50 /line  Ribonuclease E [Rhodobacter sphaeroides 2.4.1]

---M ---AKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAF VDYGGNRHGFLAFAEIHPDYYQ-IPVADRKALLEEERAYA RAEDDED--HGR SRRRSRP- -APAAAASGDAVQSGDVAGMDVVDLGEETGADALYE--TDGSDA GAADSGQPEAPDADEKPYRAMDHASDGDDEIESVADEDVA--EEIPAPRKPR-SRR Y-K--IQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKIT QAA-DRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRLWEQIRDLTLK-- SVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHA RQVIRYDEP-MPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDV NSGRAT--KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKR LKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQ VLRQLEEEGTR--KRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRV EADPSLSSPDYVIEKFKTATRV---VPEAVKVISGSADLMGAPVD--- -EPEDDWVEEE-PEI--VE- -EAE-EVADAAEAAPS ---EGQPKKKRRRRRRRRNG---VNGANGSDA QE--NGDEG---DESDEDEGDAADEPEA VEAAAAV---PELAPEAVVSAP-EPAAAEPEPTPAD-PVAAP-- ---AAEEPAAPRKRTRTRKPKVTEEAPAE-AAAEAPAEAPA--- ---AEAPAKEAKKP-RTRTSRSRKTAAAA-EAVPAVEVAVT--VDETP AEASLEIA-RTTEAAPETTPR-RPPPKP-PPPKRLWPKRLRR-S PSRWPRRRARARTTSPSAAAGGRSAADLQRLT ---QGRL---RAPLFVPAGA---DGRLARWPT ARAGGIPGLRDLR- >gi|115380147|ref|ZP_01467180.1|	  905 residues, 50 /line  ribonuclease G [Stigmatella aurantiaca DW4/3-1]

---MGSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAF VDIGLEKAAFLYVSDVVYDPDFARAQFELTEGEHEDFPEVPTESEAEAAEAAAGDT PAGPDTELELEVQELAPGELPPPQGEPPALPPEAVATVAPIVEGASPAPETPPADAPPAE AAAPAAELGVTAVESTQIVAASTGPVTPPPPPAAAFETAEAAPSAPPEAAPSETAPSEAA PAEAAPVEPSPGAE-PPQAL-QAEPPPASATALGE--LIPVPSAPAESPAPAARAPVATT GERRTPREGREAREPRHRE---KDRDGRDKDKSRRPR--EEHSR---REKDEKSKV-RKS S-R--IEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPTVDHV-GISRRI- SNEKERKRLREIVDRLR-PPGTGFIVRTVAENVPQEKLETDIRFLIEVWNQVVRRNEK-- RGGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYERILAFVTAQDPLLK DRVVLHEGD-EPVFDAYGIEQEMHRATQRKVWLKSGGYLIIDQAEALTAIDV NSGRYV--GKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKS LQEALGRDKAKTNVLRISELGLVEMTRKRVRESIGRVLHEDCPYCDGRGFVKTATTVTYE IFREIRREAPG--YKDSTLVINCSAEVARQLQGEERQELRHLMDRYNKSIQV KAQQNYHREQYDIYGR ---S---GMGPEHKVAS-SPGSGDGE-- LAMQRRPE ---NGGHGERYRQEQGRRGGG--RGDRNERGD RGERGDRNERGDRGERGG-- GERGGGERGGGERG-DRGERGERNDRGD-RREGRRP DRGDRNRGGERRGDERR--- -GGESQRP PQAAATPEP--- -SSSAGGTPPP- PPS---ST---GGSSGSEGN GQS--- >gi|119025257|ref|YP_909102.1|	  937 residues, 50 /line  ribonuclease G [Bifidobacterium adolescentis ATCC 15703] MPRSVVPTTN-EGLDQVEAVVSSDNSTNNAASSAGSVSADPAPRRRRGGRRVVRGVGAAG ASLELKVEEHAKAPLFEEPKLEPVQPARDSADFNDADDAEPSRPRRRRVTRYDDDDEMRD ERPRRRRRSSVDVQDEDDRPSRRRRRISDEPRDDRDDRDDYG-- --NRGNRDESSEDRALDAVSALPEGHETRHNPRPMTSLLFQEPILPAAP--A GRGSSDDDDADDTGRRGSDDARDSRDDRDDDRPTRRRRRRSHDTADTDRTDASNDGRGRD DGNDRNNDAEDDDHGDSRRSRRSRRLNAQERRAAAEVEQIEEDLVLDGITYAPIDDESRN GNDDDDEQPTRTRRRRRGRGNHEEADEQQTSERESRRRHEDDDEEEGTVTRRRRRRRGGS KAEESDETMSRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQNQLMEQDFLARR EH-VERLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAF VDIGQARNGVLYAGEVNWDSAR--

---L-EGQ PRR--IELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMT-GVSRKL- SER-ERARLKNIVSKI-APKDMGVIIRTAAEGASEEAITKDLENLVRQWERITAKRDE-- -FLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAPDLK DKLEKWDPAEHDG-KDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDV NTGRFI-GRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRR LVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTVS- ---ADYDDPYALKGGDPFVKTNKHGH-- GTDVQVPKGSSPDVKAKLAQ--IAAAAVAANNADLG

--EEEQEE

-- >gi|145618243|ref|ZP_01774303.1|	  919 residues, 50 /line  ribonuclease, Rne/Rng family [Geobacter bemidjiensis Bem]

---M ---SKKMLINALHPEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAF VDIGLKKLGFLQMGELHPENWKWR

---DDIPE-DQR-HRR P-R--IQEVLRRGQELIVQVEKGERDNKGSALTTYVSLPGRYMVLMPGSDSA-GISRKV- EGEGERKKLKEIIAEMAIPEGYGYIIRTEAMGRTREELQKDLDNLIATYQGIRSKGLA-- MKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVYNDVRDCLKEIDPAFE KLVKMHQEK-RPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVSIDV NSGKST--GEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNSEVEKT LKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAMALS FLRKVHAAAAK--GTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTV KGKPSYLLNQMDLELIKREKAADELPLE--KPAHGRALPKEEAAQ--- -EPAAEGRKKKKKGKK---AQEPEAAAHVEALPVAVVEEPTGAELV-- VTVEGEPE ---EH--KKKRRRKRKRGKGG--AAEAGAEAA ASQSVEAEVELPAAEPGTLPAPGPVTEQAAAAEGEQLQ--HEAGEEVKKKRRRKRR RGKGGHEAQLHESAAEFPPQLEAFAA-AGAIPVQEVTPVI-TASAVSA EPGAAAKKGRKRGKARAEEPAVSAGAAQV-EAITVPAEVIE--- ---SAQPAAKPKRP---RGGRKVKEAAAE-QGAPAVVAAAPGGAPEAP AGAAAPAEPAKAKRKPRGAKAAKGAEATPV-PEAGEAKAAPAGKKAPAAVTE GTEAPAKAKGKSTKGKSAEAP-KAKKEQEAATAAPEPPP- APAQDKA---PAKARAPRAS---RKKEAPEGT GQAPAAPVEEKPKKPRAPRKKKEEAPA--E >gi|50725997|dbj|BAD33523.1|	  898 residues, 50 /line  putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] MAARALGPPPPHAL--GATRQAPRCPHAAAADASAPPTHGYR---RGAAALG SALSARRGRHT---LCSVQLMDALRGGNLQVEPNILHSPKPLMSTRR-DDSAITCK GFCTISWNLKSDVLDGYIIFVTGDPVTLGCWESDMAVQLSPSVESNNLWTAEIKVPYGVH FKYNYFVREENDASSDIIWRPGPEYSLSIPPVGRKKHVIVVKDLWMKTSVAGIPTPS--W GSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRASSVGEHIIL---RLGNGTPLHVKN ISENPSASVHDDFTVTDKANSIKSSISEHERN-QPVEEPWIL-- ---GSVMAAKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQ PVEEPWLFQSKVVAKKPV--VQTKGKIEAKDIIRK--LRKMDKPPAPLEEDKATSG EPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTKLVPHMGGAF VDIGLSRPSLMSIKQNRDPFVYPQIVKNAK-RDSANFS-- ---DYNDDSLP- TYEDEDD- -DMTDGELAD-EENDD-ESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSY DEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSS--IQHAL-RES-SDD T-NGSRWSQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKV-GVSKKI- TGI-ERTRLKGITKLLR-PPGFTLTARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAA LAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAPELC NRVDLYEKR-TPIFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSIDV NGGHSMFGQGTSQEKAILEVNLEAAKQVC---

PMFCFVLESSIFAF-- -KPYFSLLI---

-- >gi|100060889|ref|ZP_01322858.1|	  968 residues, 50 /line  hypothetical protein BpseP_03003293 [Burkholderia pseudomallei Pasteur]

--MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACF VNYGEDRHGFLPFKEVARQYFKEG

--VDM-RS A-R--IQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI- EGD-ERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQS-- --GHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNV GKVKRYHDD-VPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDV NSARAT--KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQR LKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQ VLRIIQEEAMK--ENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVL IPNKHLDTPHYKLERLRHDDARLDDPRASWKMAEEAAR--ELEAE--TGY-- -SKRAEETKPRQEAAVKGIT---PERPAPSPA-PQRQSAPEAAAPVAAA-PASGGGFMKW LKGLFGAQPAAVPAPA-PAAQETAARPARERAERGERGEKAERGERGGDRNR--H- RRGGAAQQAGGRDQAAAGGGRAQAPR--AEREGKETREPREGREARGGRDNREGREARET REAREPREQREPREAREQREARERAETVDAAEAPRGERRERGER RKPAPHVATLETVNRGESAHAETAEK-PLYAPGAEAGVDAD-SNARDG EERRR-RRRGRRG--GRREREDEVA--GAVQAA-EGSEGVTAEA ---EALEHAEHAQQRV--APVANQAPEHAAQAG--AGVAA AAAATVAAEAIAH-VESGA--KVEPQPAAEASAGDTE--Q AEAVPARSIEAPAQAASTGQA--EAVQAAPAAPAHVTPA--T-ADVAREPAA PAETA-SAETTPAEIPPAE---AAPAEAPA---AEASEVAASAV ASAPAPAA-E >gi|114331691|ref|YP_747913.1|	  849 residues, 50 /line  ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91]

---MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAF VDYGAGRHGFLPYKEIAPTCFDKN

--TER-SS H-R--IGELLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRV- SAE-ERAELREVINHLQVPDGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEGAASS-- ERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANV DRLKLYQDD-IPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDV NSARAI--RGSDIENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETN LLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSALH ILRIIQEEAMK--EQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIIL IPNIYMETPNYTINRLRHEDVKSTELPPSYGMVEKTTE--EI-TLP-- -STSQELKAIRPKAAVTGIK---PEQPAPVPE-EK---PREQLSFLDK FFSLFRPASSSRVEPE-QTAEESQARPLR--SERGRNRRDRGRNKRTKNNIP--GT TASETLQEAG---NLPSLEQSTGHPVES --TS NDDHHHKASRQGQDQLQESGAESNLP-DATTTGEGTTPAGD-SVSERK TDRRG-RSRRRRG--GLHRDREERT--DANKTTEQGEVTQITSS ---ENNEPVVPSADGKEDRELSFLPPTEPTQHI--TSIA- ---SVDDITAE- QEVASAKVIEP--INTDAESN--TGSQAASE--SRQPIE--L-PDLTQSGLV MIETA-PDKI--AEVPEEA---LAPVKRPR---IRPSYLAE---PDTT SSEPLVQIETR--D >gi|30249428|ref|NP_841498.1|	  853 residues, 50 /line  Ribonuclease G and E [Nitrosomonas europaea ATCC 19718]

---MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAF VDYGAGRHGFLPYKEIAPTCFDRN

--TDW-SG H-R--VADLLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRV- SAE-ERAELREVINNLQVPEGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEEAASN-- EKGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANV DRLKLYQDD-IPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDV NSARAI--RGSDIETTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVESS LLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSALH ILRIIQEEAMK--EQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIIL IPNIYMETPNYTITRLRHEDIKSTELPPSYEMVEKTSE--EV-TLP-- -SISQETRATRPKAAVTGIK---PEQPAPVPE-EK---PREQLSFLDK FFSLFRPAGSNRTETD-QAAEESQTKPSR--GERSRNRRDRGRSKRTKTSTQ---V TANGSLQEAG---HSSLLDHPV--VVEHPVTDRA-- --TD NDRQHRKNGRQNPPQKLE--VASDQL-DVSTTPADTAATAD-STSERK TEKRG-RSRRRRG--SLHRDREDQI--NLNTATGQDEVIPIGEN ---ETVEPVVSSDDDSKDTENILLLPVEPVGD---TSST- ---PTNDIIEN- QVTASAEIIETETIHTRGEPD--SEYQVTVEPHPHQTIE--L-PDLAQSGLI MIETA-PDKI--SETEEVP---PAPSRRPR---SRPRRSVE---PAAD NAEPLVQVETR--D >gi|145588576|ref|YP_001155173.1|	  879 residues, 50 /line  ribonuclease, Rne/Rng family [Polynucleobacter sp. QLW-P1DMWA-1]

---MKRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACF VNYGEERHGFLPFKEVARTYFKEG

--IDV-RN A-S--IKDALREGQEIIVQVEKEERGQKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRI- EGE-DRQELREAMSQLEVPEGMSIIARTAGIGRDATELQWDLSYLMQLWKAIDEAAKG-- NSAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYEQAAAFMSVVMPDNL PRVKRYHDD-VPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDV NSARAT--RGSDIEETATRTNLEAADEIARQARLRDLGGLIVIDFIDMESSKAQKDVENR LRDALRHDRARVQMGKISKFGLMEMSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQ VLRIIQEEAMK--ENTAAIHTQVPVEVAAFLLNEKRAEVIKIETRFKVNVLM VPNKHLETPHYKLERLRHDDPRLDDQKASYVMAEEAAR--ELETD--TTV-- -SRKDAELKVRPEAAVKGIT---PAQPAPISQ-PRPARTE--KTT-TESSGGLFGF IKKLFSSSPAVEEKP--APSNTRGRNQG--RNGDRNNRNGNRGR--RG DRNERN-- ---SERAERPAAAAAEGPASTPAEGTNNRTRNNRTR NNQNGPKPERQEGNRNQANPAAVTPA-TEAAPGTDATPGV--EG EERRG-RGRNRRGRGRGQRERGERT--EGGTDASPAVVASSASP ---FAGPPVGMA-GASASMPIQNITNSFSNAK--PV AEKQERAPRAPRQSNRSAP--SSTPVAIPVAVVAAKA--T VEVITKPAPELPK--VAFQALEETPLHSVVQSAGMI WVATD-SSKH--AEAQSQ-IKAEPVA---SNLGRTPK--PAAAL PDGPMVLVETGG---QEKT--V >gi|74317582|ref|YP_315322.1|	  873 residues, 50 /line  ribonuclease E and G [Thiobacillus denitrificans ATCC 25259]

---MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAF VDYGCERHGFLPFKEIARSCLPNG

G-R--VPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRYVVLMPTNPRGGGVSRRI- EGE-ERNELRDTLAQLDIPEGMSLIARTAGIGRTAEEFQWDLNYLLSLWKAIDGASTS-- MSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAHVMPANV NKVKLYRDD-VPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDV NSARAT--KGSDVEQTAYNTNLEAADEVARQMRLRDLGGLIVIDFIDMENPKHQREVENR LRDALHHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESSALH ILRILQEEAMK--ENTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVL IPNIHMETPHYTITRLRHDELNVA---GAAEPSYKMALVPET--E--AIY-- -QTAQAAAPLRQEAAVKSIP---PPQPTVAPR-P--VVPAS-EPAPAGLFDR IFGWFKKRGDETHA-P-EAAPAAEAVPAIVRSERPSERRERERKP--GQRRG--R- GEGREGREGRN- GEGRNGEARQGESR---QTEPRQPEVREPRAE -QAKPPRPPRQPKPRPE---AEVAPR-AATAPVAE-E-PAGEEK REPRSRRGRGRRGRGEGRSEAAANG--SATPRAVIEIAGYRAVI ---ELARPARPAPAAAAPVAAAAEP--AAAPA PSQQALQLDAPTPATKPAPGAV---TASPAEILAA- LAAGEAELQQVETRSAAAAAA--DGSEPSRPRRRRRPSV--K-ADAEPVSLM QVETS-APIEVPVDA---PAPAAGPH---PTRRRPRP---QPSA PQEPLVQVETQA-K >gi|91775674|ref|YP_545430.1|	  904 residues, 50 /line  ribonuclease, Rne/Rng family [Methylobacillus flagellatus KT]

---MKRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGVITRIEPSLEAAF VNYGTDRHGFLPFKEIARSYFLND

--SDAGRS P-R--IQDVLKEGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRI- EGE-ERNELRDTMAQLQVPSGMSIIARTAGIGRSVEELQWDLNYLLQLWTAVESASTI-- QSGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTPDIYEQAVQFMNHVMPNNV SRVKLYRDE-IPLFSRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDV NSGRST--KGSDIEQTAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENR LREALHHDRARVQTGKISRFGLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALH ILRITQEEAMK--ENSAIIQVQLPVEAATFLLNEKRSEIHKIEQRMGVQVVL IPNIHMETPNYNILRIRHDDVE-ETGRASYEMVELPSE--TLE--T-- -ALAQEPKPAKAEAAVKGIT---PASPAPAAA-REKE-KPSSTSLLHR FKSWLASVAAPKPEVK-PQEETQQR-DSNRNPRRNNRRNERSASERTGNDRQ MQNEQRQEQR--KEQRSQQERR-- ---PQQAEQRAAQ--- --GRQERAERPERNERQP---KVQQP-QPTPSLQSETPI-E-ANSEQR GNRRGRNGRRERQPRSDNANRENRQ--QAAEELHAAAAAPIASV ---EAAERPVEAKTAPTTPEAAPITQVKENTETVHT ATEAAPQKEAPAPAIRKDVVVTEESLPAIDATAVKETRTKEEKSAHLSE--P LAESPADTKQEKPLEALADEAPTEAAKPEKKPRAPRRRKVEAE--KPADLMDSGLQ LVETK-AEAI--QAVIAVE---EAPAPRAP---RKPAAWQQKAAKEAA VSEELVMVETQ--K >gi|113460860|ref|YP_718927.1|	  942 residues, 50 /line  ribonuclease E [Haemophilus somnus 129PT]

---MKRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKANIYKGRITRVEPSLEAAF VDYGVERHGFLPLKEIAREYFPDD

-YVY-QGR P-N--IRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI- EGD-ERLELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQS-- RPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFI NRVKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDI NSARST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR MREAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLS ILRLLEEEALK--ENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHNVDIVV APNEAMETPHFSVFRVREGEEINE---LSYNLAKLHEMNDET---YVVEDAFISRH LENSAATVESAVENAAVSLA---IETPAPMPQ-ERKQ---ERESLLRR IIEGIKNLFADNSSKNKKNKNTRQNKNA-RHNRRNQDRRS SRRIRQEHE-IK--SDENNKLDTQHSHYT--ERYSKHAKKGVDDPQ-- ---IQTKKAGELEIHTKDDETI---ETIQ---PRRQRRDL RKKVRVEENL-VDTP---NLGSTEEHVENE--K-TTEPVTSLEQAVLQTENEK---THER QDNNYRHRRLPRHLRV-NNQRRRRNVELKSAMPLF---AAVASPELAS GKVWVDVNVVN--SKNNNFLSVDELLKQQYQQE-EIEVVIPASEI--LMDTQ SDDIKPLSNFVSQPANEAVEKKVQETL-QRLT -QEV-VDE-SSTIERTE-V-DTNIS--VPE--FVREYQFNGRLG TISAVMHTKAEMTL--AKSSDEPM---QPFSIVEWQ-DSRYYFYGRGAAGHH CAISHVYSEPANTKI--E >gi|68249015|ref|YP_248127.1|	  951 residues, 50 /line  ribonuclease E [Haemophilus influenzae 86-028NP]

MRFILRFFKYLIRELT ---MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAF VDYGAERHGFLPLKEIAREYFPDD

-YVF-QGR P-N--IRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRI- EGD-ERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQS-- RPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFI NRVKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDI NSARST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENR IRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLS ILRLLEEEALK--ENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIV APNEAMETPHFSVFRLRDGEEVNE---LSYNLAKIHCAQDEN-TEESLLSRN VETTAVIEQPAVESAVVALS---ISEAAPTPV-ERKS---NEPSLLAK IIAKIKGLFATKSE-ENKPKNNRTSRNP---N-RNQRRSQDRRS SRRPRSE---NNETERTEEQVRNVR--ERNQRRPRRNLVEES-- ---IAESAVNSTPVFEAKEERT---EPVT---QRRQRRDL RKRVRVEDNE-TVVE---NN-F--S-TTEKMPEVDVITVQNNDEKPVHQNQR SERQERQRRTPRHLRAANNQRRRRNQEPKSPMPLF---AAVVSPELAS GKAWIDYSTVNL-PKENHFLSVDELLEQEKTKK-GF--ITPAMGI--VVEEK SPDVKPALDFITQPANESVQKKVQESL-DRLS -SYKPQEV-VESIDPAINVDE-P-ETLEK--VSK--FVRTYEFNGRLG TISSVPHTKAEMTL--AKANDEMP---EAFPIRAWQ-DSRYYFYGKGAAGHH CAISHVYSEPTRAKS--E >gi|126511000|gb|EAZ73594.1|	  963 residues, 50 /line  ribonuclease E [Vibrio cholerae NCTC 8457]

---MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAF VDYGAERHGFLPLKEIAREYFPDG

-YSY-QGR P-N--IKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRI- EGD-ERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS-- NPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFV NRVKKYEGE-VPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI NSARAT--KGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENR LREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALS VLRLIEEEALK--DNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITI VPNSDMETPHFEVIRVREGEEQDV---LSYLIPKKLEAMKEAEGKEVVDVELKPKR IEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAE-VQQP---AQPGFFSR VFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRD-KNRRRGNEENN ERNDKETSN-SNRKPQERKPKQERGERNERNDRNERPETERPERQDRRNKRDESKT AKLLEQGRQ--LAAEAQQEVKAVEPKEEKA---AVVK---ERRQRRKL SKQIRVKDQL-AAEE---LDNLSTAPVDNAFDA-PAPVNLPVTDDFADSAQED---NEQD DQKQRRNRRSPRHLRA-SGQRRRRGRD-RRPNPFRLRKGGVASPEMAM GKVMPRYDLAPR-PQSRH---ETAEGAQH-VTHVTPTAATA--VVESE KVAAPRVLGGVAFPEMAMGKVIVRRETA -AVQPEPV-VQ--EPVITDVI-A-ETLIAPVEPV--VVEATVIEAPVI EESATETAALETVV--AKVAE---VEDE-RENYKLI ---QKRK--- >gi|52425677|ref|YP_088814.1|	  960 residues, 50 /line  CafA protein [Mannheimia succiniciproducens MBEL55E]

---MKRMLINATQQEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAF VDYGAERHGFLPLKEIAREYFPDD

-YVY-QGR P-N--IKDIIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI- EGD-ERLELKDALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQASQS-- RPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFI SRIKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDI NSARST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR MREAVRQDRARIQISRISRFGLLEMSRQRISPSLGESSHHICPRCQGTGKVRDNESLSLS ILRLLEEEALK--ENTKQVHTVVPVNIASYLLNEKRKAIHDIEKRHNVEILV VPNKEMETPHFSVFRVRDGEEINT---LSYNLVKVYEEQETT---FIADEPFTTRV TETAAVTTENVLESAALSMT---ISEPAPTIE-VKKE---EQPSLFVR IVAAIKGLFASEPKVEEKVEE--APQP-NTRNRRNNQEHRN--SRRNRNERN NRGNNEEPA-DKVQSEKS---AEKAERPARSERT--RRNNRNRNAAADDS-- ---LNNESVIEAVTNETTDDEA---KAPQ---QRRQRRDL RKRVRVTEEQ-VTVAAEPVDKPSLA-ESVPVEPVVEE--NVYQE RDRQDNRRRLPRHLRV-NNQRRRRNAEQVSAMPLF---AAVASPELAS GKVWIESPTAPAKPKESAFLSVDELLEQQSEVK---QPGVTTPAPATQV--IFDKA DNDIAPLASFVTQPANESVQKKVQESL-DRLE -QTNGQQTEVKEDDNASNMTL-SDVTATESAVEKTEVL--NLSNYRFSGRLG TISAVKHTKAEMTL--AKAADEVL---PPFEIVQWQ-DSRYYFHGKGSAGHN SAVSHVFTAATQAKA--E >gi|75428521|ref|ZP_00731723.1|	  962 residues, 50 /line  ribonucleases G and E [Actinobacillus succinogenes 130Z]

---MKRMLINATQKEELRVALVDGQHLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAF VDYGAERHGFLPLKEIAREYFPAD

-YVY-NGR P-N--IKDVIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI- EGD-ERIELKEALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQVSEN-- RPAPFLIHQESDVIVRAIRDYLRRDIGEILVDSPKIYEKAKAHIKLVRPDFI NRIKLYQGE-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALIAIDI NSARST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENR MREAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSSHICPRCQGTGKVRDNESLSLS ILRLIEEEALK--ENSKQVQCIVPVQIASYLLNEKRKAIRSIEKRHNVDIVV APNEAMETPHFSVFRLRDGEEANV---LSYHLPKLHEVQEDV---FVAEESLISRN IETAAVTAENMAESAVLSMT---IPEAAPVIE-AKKE---AESSLFAR IVAAIKKLFTTAPEAEKVEE-QPVVTRNNRNNRRERN--NERNNERRN SRRSRAERN-TARNNDTA---AEKPETPSRNERSNERNNRRNA---RR AALTDETSA--NAGTAEAVETSEEKSPAPRQPR---ERRERRDL RKKVRVSNET-V--EQQAVEEVSAVAEETVTEQPSSE---SPRR ERSERNSRRMPRHLRT-NNSRRRRNE--VSSMPLF---AAVASPELAS GKVWIDSNTTSQKTKESNFLSVDELLEQQTQND-EVEVSTPASSI---VEKA ENNAQPL-GLVSQPANEAVEKKVQESL-ERLNE--- -EQRVLEQQAKASSVAEAAVE-KENVIPEKKVNEPEISVKNGQKFDRTYRFNGRLG TISAVRHTKADMTL--AKADNEVN---VPFDIVEWK-DSRYYFHGKGSAGHH SAISHVFSEPTKAEA--K >gi|90021266|ref|YP_527093.1|	  968 residues, 50 /line  DNA polymerase III delta prime subunit [Saccharophagus degradans 2-40]

---MKRMLINATQPEELRVALVDGQWLYDLDIENRLREQKKANIYKGRITRVEPSLEAAF VDYGSERHGFLPLKEISREYFAKQ

PKDI-DGR I-R--IQDVVKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRI- DGD-DRTELKDALSQIDVPAGMGIIVRTAGVGRRAEELQWDMNYLAQLWASIKTAAEE-- KTAPEFLFQESNVIIRAIRDYLRPDIGEVIVDNQDAYNLATAFVEQVMPNYR SKVKLYEEP-LPLFNRFQIESQIETAFEREVKLPSGGSIVIDVTEALISIDI NSSRAT--KGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQREVENR MRDALEMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSIALS ILRLVEEEAQK--ERSAEIRAVVPVAVATYLLNEKRKVISGIEERQKTRIVI IPSEKMTTPHFDVQRLRDDDVVSS---E---ISYKI-EVPQGEDEE---KIQDD-- AAALAKLPRPAVQAIP---PAQPAPEAP-K---PDSLLTK ILKKLKELFKTDDKKRK---NTSKNSRGQQRRRGNNSQ-NNRNRN-RN-RNGRGNDNRNK NRDDEITDNLSSRTKSDQ---SQQGQGPSSDDNRPDRGNRKRGNRRRNNNRRNDQDRNDS PESNNDEQQ--NNNQPQEQNNAPKEQGPNRRPN---GRRGRGGR ERKREPVPQA-AEESVTKDDSALAAEVTSAIDTAEKAFATNS---PAELKQA KSEAKEQAKSEAKEQAK-SEAKEQAKQERAPQ---EAAITAETPSEAK QPEATATAAEAK-PEPSEKAKASQAPQAAEASDTTETVAET--KVEAP SAEAAPAKEAPVETAAETASE--AETA-EPVAAAETAEVAEVA-VAEATEEASEAK EELAPAQAVRKQYSRATN-DPRATPKPVANTLVSN-VVTQIRMSRPLD TTQPANILRNPRDL--SRPAND---PRL-KRNIEEV ASD--A >gi|114773717|ref|ZP_01450745.1|	  968 residues, 50 /line  ribonuclease E [alpha proteobacterium HTCC2255]

---MKRMLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAF VDYGADRHGFLPLKEIARHYFPKN

-YTF-EGR P-N--IRDAVKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRI- EGD-ERSELKATLDQLELPKGMGLIVRTAGVGKSFEELAWDLKVLLTHWEAITAVAEE-- RPAPFLIHQESNVIVRAIRDYLRRDVGEIIIDKPAIFEQALQHIELVRPDFA NRVKPYTGD-VPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI NSARAT--KGGDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDYIDMSVNKHQREVENR MKDAVSGDRARIQLGRISRFGLLEMSRQRLRPSLGESAHNVCPRCAGTGTVRGTESLALS VLRIIEEECIK--DNTGQVEAQLPVDVATYILNEKRKALREMEERNKVEVLV LPNPNLSTPNFQIERRRPEDKVSG---ISYQL-ELAESNEQI-- QEAASAVPVQREEPALKGMI---APKAAPSPKPAEAK---ATPSLIAG FIAWLTALFAPKPAPKAK---GKGRGRNNNQRRQGQNRNRN-RN-QRNRNQGDKND ARDNNVNAK-DNRELHDSNDAK---EGKSNPRRNTRNRK-RHDNDEGDNGQQK--- ---RRQPRATETSDVNDA---PAPK---ERRKRRDN RKNVRVTNEA-STAEEVNTIASTSEPVQSEVIT---TGDESVNTNVE---ANDTVP TDKKTRSRRSPRHARA-AGQKRKQEEQAETENVSQTVEGQTALPLEEPTGAQIQAIVEEN QQIALSADHGEDTTTESTSLSNEEL-EVKRNNSLIESDNAVESSNDVIQATSE--AIDKA KEDLDSVSEVVDTPIQALLD--ISEETEVTSTEASTAIVSEAVTPVDTISAP EEITAPTSV-PA VLAPKAHASHPMAL--PAVLAQEF---GEIVVKQKDNSERYEYVKTEKRADM QSVTSRVSAPTTLPLSVD >gi|119478177|ref|ZP_01618233.1|	  956 residues, 50 /line  ribonuclease E [marine gamma proteobacterium HTCC2143]

---MPKSSAYSGFVSN ---MKRMLINATQPEELRVGLVDGQRLYDLDIENRTRVQMKDNIYKGTITRVEPSLEAAF IDFGADRHGFLPLKEISRDYFYRQ

PSDV-QGR F-K--IRDVVKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRSI- EGE-ERSDLKDALNNMAIPKGMGAIVRTAAVGRSAEELQWDLDYQAQIWDAIKKAAED-- QPAPLLLLQDSNVIIRAIRDYLREDIDQVLIDAEEAYTDAMNFVTRIMPHYE SRIRLYQDP-VPLFNRYQIESQIETAFQRDVDLPSGGSIVIDPTEALVSIDI NSARAT--KGGNIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMSAAKNQRAVENR MRDALNIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCTGQGTIRDTKSLSLS ILRLVEESASK--ERSAEIRALVPVNVASYLLNEKRQPIHDIELRTGVRVVI APIPQLETPHFELQRLRDDEIGKD---VEISYKMQTEIADE-TSIQ-V QQKAAAPQQAAVQSIA---PPAPAPLAA-AKANIAP--DTA-T-KSPGLLSK IIGFFTGGDKDDEKKDEQKKPEKRESTNRRPQNRGGQQNNNRNRN--RNRNKSRNE SRNESNDRNEGNDRGTKD---GNRNAAPQQKK THDKVEPR--EAPAANESHEDK-PQRRPS---NRRPRSSQ RRRNRGPNTENNEIENTSNE---LPKTPEAVNNGQDLQQLEPAID---HPVV APIAAVSEVAEVSE--VSAVAEV---AEVAQ---VAEVAE VSEVVEVAEVAEVTEISEVAEVAEVIVAPVTEV-ELIVESTPETV--IVDQQ E---TPASDEILEPDTTAEAPSVDNAVVETEMEPLEAAIANTASSAIAEPPVEEEAVVTD N-AANTALTEAPTESG TAEA-SPTSAEAPV--GRASNDPRLTPKTIDAVEIE-TEHLDTIPKAPAAAAEPD--SEK AAPSRAPNDPRHKR >gi|88810810|ref|ZP_01126067.1|	  910 residues, 50 /line  RNase E [Nitrococcus mobilis Nb-231]

--MLINATQPEELRVALVDGQSLYDLDIETPARERKKANIYKGKITRVEPSLEAAF VQYGAERHGFLPFKEIARGYFQTE

EDAD-LTK I-S--IKEAIREGQELVVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRI- EGQ-DRNEIRDALRSLDVPEGMGLIVRTAGVGRSVEELQWDLDYLLNLWMSIQKAAAE-- RNAPLLIYQESNVIIRALRDYLRNDIAEILVDDPDVYEQAKGFIQQVMPHNL AKLKPYQDN-VPLFTRYQLESQIESAFQREIRLPSGGAIVIDRTEALISIDI NSSRAT--KGADIEETALQTNNEAADEVARQLRLRDLGGLIVVDFIDMGANRNQREVENR LREAVKMDRARVQVGRISRFGLLEMSRQRLHTSLGESSQEVCSRCGGRGTVRGVESLALA VLRIIEEEAMK--EKTHKVLAQLPIEVATFLLNEKRSVLSATEQRNGVEITL IPNKTLETPHYEIQRIRTDDRTAE---G---SSYQLVAKTPQGK--LAEQLVAA-- ATQKPRIEEPVVKHLK---PLTPAPLPL-QMKNSTL--HDP-L-PMSKGLSS FFGWLRKLVPGSEHGADLGTTAN---RGNEPTRTQNVRGANARSDDTT-QGRTLADNSQS MTTAGQEAA-SVDEKTEA---NGDGQAHGSSRRSSRRGRRGGRRRRRSSDKS QQLGAQPEA--VSGEATQ-TPRAPG---SEYEPVQP EPD-STSGSPVEPPRAT--PAHTT SSSKTDAADTAKGSI--GGDPRRWPGRPRIPHNEGSAERNIAAPQMALR--- PELESTSPAAPNEETTRG---TAATKQAA--VKPEV PRLAAPASSAPVEPTQIREQRTDGPLAREDD- -SAKPPVVLEANDGKLESADK-ASTA-APAKPKTRKASANSSKK APSRAQRSKEPQTQ--RRKRPNPE---NEGE-ADSK SDGERAVAGGDDSLA--R >gi|71907634|ref|YP_285221.1|	  870 residues, 50 /line  Ribonuclease E and G [Dechloromonas aromatica RCB]

---MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACF VDYGADRHGFLPFKEVSRAFFQPG

--TE-VGR A-R--IQDALKEGQELIIQVDKDERGNKGAALTTYVSLAGRYLVLMPNNPRGGGVSRRV- DGD-ERAELRDVMDQLEVPNGMSLIARTAAIGRQAEELQWDLNYLLQLWTAIDGAAQQ-- QSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQARAFMGTVMPGNI NRVKRYRDD-VPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAVDV NSGRAT--KGSDIEETAFKTNQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENR LRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSAESAALH ILRILEEEAMK--ENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILL IPNVHLETPAHTITRLRHDDLNQD---DLREPSYKMVDMPIE---EAIKQ-- -ATQAEAAKPRQEAAIKGIS---PDQPAPIMP-EKAEAPV--AAP-AQPEGGLFSK IFSWFRSSPKPVE---PVAAPEPAKKPREGRGDGRRDGRRGG---RNGNRRDEERG ERKERP-ERKERNAVDKAPQDGTPASNGERKERRPRG--- ERKERGER QQQAETVENK---LVQQTAAADAAVAPLLANEAPDAQ--G NEEQGNRRRGRRGGRG-RGERRNEA--DSTPVAEV---LPVIEPAVEPIN-- QEPVVVVIPAAEP--VV-VA AEVVTPVVEPVASPIVEPVQVAEV IEAAPAAIIEALPVEIQESPK-AEAPAPAPAPVVAEPVN--LEATLAESGLV MVQTT-SAAV--AAAQPEP---PVKLGRPR-KAKPASKQA ESESLVMVETA--K