At2g05620.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g05620-1h2vC.pir.txt

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Assigned types to 133 residues in Sequence 2-05620, 0 remain unknown Assigned types to 71 residues in Sequence 1h2vC, 62 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g05620-1h2vC.pir.txt into sequence alignment.

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>1H2V.pdb Made from 6667 ATOM records in 1H2V.pdb DHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARL LPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLV RFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLP WVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEY LDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTE DSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKE RKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIE LCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRW SWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCP SNPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNFN PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVM FEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEI LHSTIRKMNKHVLKIQKELEEAKIERLQEKVESAQSEQKNLFLVIFQRFI MILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENL LFTAELDPHILAVFQQFCALQAEKLLKKSCTLYVGNLSFYTTEEQIYELF SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI IRTDWDAGFKEGRQY

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Best alignment: 1H2V.pdb  498  NFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVL   547 +FNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVL 1h2vC       4  SFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVL    53

1H2V.pdb  548  RVMFEVWRNHPQMIAVLV   565 RVMFEVWRNHPQMIAVLV 1h2vC      54  RVMFEVWRNHPQMIAVLV    71

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Highlighted IDENTICAL residue LEU 542  index1  502  path   69  %Seq 100.00 Highlighted IDENTICAL residue VAL 548  index1  508  path   75  %Seq 100.00 Highlighted IDENTICAL residue THR 550  index1  510  path   77  %Seq 100.00 Highlighted IDENTICAL residue LYS 557  index1  517  path   84  %Seq 100.00 Highlighted IDENTICAL residue PHE 559  index1  519  path   86  %Seq 100.00 Highlighted IDENTICAL residue ALA 565  index1  525  path   93  %Seq 100.00 Highlighted IDENTICAL residue ALA 567  index1  527  path   95  %Seq 100.00 Highlighted IDENTICAL residue VAL 572  index1  532  path  100  %Seq 100.00 Highlighted IDENTICAL residue SER 579  index1  539  path  107  %Seq 100.00 Highlighted IDENTICAL residue LEU 604  index1  564  path  132  %Seq 100.00 Highlighted 10 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g05620-1h2vC.pir.txt.1H2V.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g05620-1h2vC.pir.txt PIR amino_acid 1H2V.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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