At2g10965.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g10965-1e6yA.pir.txt

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Assigned types to 249 residues in Sequence 2-10965, 26 remain unknown Assigned types to 213 residues in Sequence 1e6yA, 62 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g10965-1e6yA.pir.txt into sequence alignment.

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>1E6Y.pdb Made from 18862 ATOM records in 1E6Y.pdb AADIFSKFKKDMEVKFAQEFGSNKQTGGDITDKTAKFLRLGPEQDPRKVE MIKAGKEIAEKRGIAFYNPMMHSGAPLGQRAITPYTISGTDIVCEPDDLH YVNNAAMQQMWDDIRRTCIVGLDMAHETLEKRLGKEVTPETINHYLEVLN HAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDALADEIDKQFLIDINKE FSEEQAAQIKASIGKTSWQAIHIPTIVSRTTDGAQTSRWAAMQIGMSFIS AYAMCAGEAAVADLSFAAKAALVSMGEMLPARARGPNEPGGLSFGHLSDI VQTSRVSEDPAKIALEVVGAGCMLYDQIWLGSYMSGGVGFTQYATAAYTD DILDNNTYYDVDYINDKYNGAATVGKDNKVKASLEVVKDIATESTLYGIE TYEKFPTALEDHFGGSQRATVLAAAAGVACSLATGNANAGLSGWYLSMYL HKEAWGRLGFFFDLQDQGATNVLSYQGDEGLPDELRGPNYPNYAMNVGHQ GGYAGIAQAAHSGRGDAFTVNPLLKVCFADDLLPFNFAEPRREFGRGAIR EFVPAGERSLVIPASDTVDIYDDRGKLLESNVDIMSLAPTRNAAIQSIIM DTKRSVAVNLAGIQGALASGKMGGKGRQILGRGLNYDIVGNADAIAENVK KLVQVDEGDDTNVIKVKGGKSLLIQSPKSRIIAGADFMSATTVGAAAVTQ TIMDMFGTDPYDAPIVKSAVWGSYPQTMDLMGGQVQGILSIPQNNEGLGF SLRNIMANHVAAISNRNAMNASALSSIYEQSGIFEMGGAVGMFERHQLLG LAYQGLNANNLLYDIVKENGKDGTIGTVIESVVRRAIEAGIISVDKTAPS GYNFYKANDVPKWNACAAVGTLAATLVNCGAGRAAQNVSSTLLYFNDILE KETGLPGCDYGKVEGTAVGFSFFSHSIYGGGGPGVFNGNHVVTRHSRGFA IPCVCAAVALDAGTQMFSIESTSGLIGDVFGAIPEFREPIKAVAGVAYER QYYPGATSVAANRRKHMSGKLEKLREISDEDLTAVLGHRAPGSDYPSTHP PLAEMGEPASTRENVAATPGAAAGDRVRYIQFADSMYNAPATPYFRSYFA AINFRGVDPGTLSGRQIVEARERDMEQCAKVQMETEITDHALAGVRGATV HGHSVRLQEDGVMFDMLDRRRLENGTIIMDKDQVAIPLDRKVDLGKPMSS EEAAKRTTIYRVDNVAFRDDAEVVEWVHRIFDQRTKFGFQPKAADIFSKF KKDMEVKFAQEFGSNKQTGGDITDKTAKFLRLGPEQDPRKVEMIKAGKEI AEKRGIAFYNPMMHSGAPLGQRAITPYTISGTDIVCEPDDLHYVNNAAMQ QMWDDIRRTCIVGLDMAHETLEKRLGKEVTPETINHYLEVLNHAMPGAAV VQEMMVETHPALVDDCYVKVFTGDDALADEIDKQFLIDINKEFSEEQAAQ IKASIGKTSWQAIHIPTIVSRTTDGAQTSRWAAMQIGMSFISAYAMCAGE AAVADLSFAAKAALVSMGEMLPARARGPNEPGGLSFGHLSDIVQTSRVSE DPAKIALEVVGAGCMLYDQIWLGSYMSGGVGFTQYATAAYTDDILDNNTY YDVDYINDKYNGAATVGKDNKVKASLEVVKDIATESTLYGIETYEKFPTA LEDHFGGSQRATVLAAAAGVACSLATGNANAGLSGWYLSMYLHKEAWGRL GFFFDLQDQGATNVLSYQGDEGLPDELRGPNYPNYAMNVGHQGGYAGIAQ AAHSGRGDAFTVNPLLKVCFADDLLPFNFAEPRREFGRGAIREFVPAGER SLVIPASDTVDIYDDRGKLLESNVDIMSLAPTRNAAIQSIIMDTKRSVAV NLAGIQGALASGKMGGKGRQILGRGLNYDIVGNADAIAENVKKLVQVDEG DDTNVIKVKGGKSLLIQSPKSRIIAGADFMSATTVGAAAVTQTIMDMFGT DPYDAPIVKSAVWGSYPQTMDLMGGQVQGILSIPQNNEGLGFSLRNIMAN HVAAISNRNAMNASALSSIYEQSGIFEMGGAVGMFERHQLLGLAYQGLNA NNLLYDIVKENGKDGTIGTVIESVVRRAIEAGIISVDKTAPSGYNFYKAN DVPKWNACAAVGTLAATLVNCGAGRAAQNVSSTLLYFNDILEKETGLPGC DYGKVEGTAVGFSFFSHSIYGGGGPGVFNGNHVVTRHSRGFAIPCVCAAV ALDAGTQMFSIESTSGLIGDVFGAIPEFREPIKAVAGVLAYERQYYPGAT SVAANRRKHMSGKLEKLREISDEDLTAVLGHRAPGSDYPSTHPPLAEMGE PASTRENVAATPGAAAGDRVRYIQFADSMYNAPATPYFRSYFAAINFRGV DPGTLSGRQIVEARERDMEQCAKVQMETEITDHALAGVRGATVHGHSVRL QEDGVMFDMLDRRRLENGTIIMDKDQVAIPLDRKVDLGKPMSSEEAAKRT TIYRVDNVAFRDDAEVVEWVHRIFDQRTKFGFQPK

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Best alignment: 1E6Y.pdb  639  VGNADAIAENVKKL   652 VG+A A E V KL 2-10965    141  VGSAAATVERVNKL   154

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Highlighted IDENTICAL residue ALA 2079 index1  642  path  146  %Seq 100.00 Highlighted 1 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g10965-1e6yA.pir.txt.1E6Y.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g10965-1e6yA.pir.txt PIR amino_acid 1E6Y.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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