At2g12900.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g12900-2b9cB.pir.txt

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Assigned types to 264 residues in Sequence 2-12900, 0 remain unknown Assigned types to 142 residues in Sequence 2b9cB, 122 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g12900-2b9cB.pir.txt into sequence alignment.

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>2B9C.pdb Made from 2301 ATOM records in 2B9C.pdb ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL KTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGQLVEEELDRAQERL ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS LEDKVEELLSKNYHLENEVARLKKLVGE

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Best alignment: 2B9C.pdb   67  EVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE-   115 ++ ++  +E+      E+ +L E     L  E K +T  ++SLE + + 2-12900   143  DLEHRIKFLENKNALIFEKIKLLEKDKTILMNEKKEITIQIESLEQQAQL   192

2B9C.pdb  115  -ELLSKNYHLENEVARLKKLVGQLVEEELDRAQERLATALQKLEEAEKA   163 + L++ H+E E  ++  +  +    EL R +      LQ   E +++ 2-12900   193  RDALTEKLHVEIERLKVITISNEKGSVELQRLKMETCEVLQYRREFDRS   241

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Highlighted IDENTICAL residue GLU 173  index1   76  path  152  %Seq 100.00 Highlighted IDENTICAL residue GLU 181  index1   84  path  160  %Seq 100.00 Highlighted IDENTICAL residue LEU 185  index1   88  path  164  %Seq 100.00 Highlighted IDENTICAL residue GLU 187  index1   90  path  166  %Seq 100.00 Highlighted IDENTICAL residue LEU 193  index1   96  path  172  %Seq 100.00 Highlighted IDENTICAL residue GLU 196  index1   99  path  175  %Seq 100.00 Highlighted IDENTICAL residue LYS 198  index1  101  path  177  %Seq 100.00 Highlighted IDENTICAL residue THR 201  index1  104  path  180  %Seq 100.00 Highlighted IDENTICAL residue SER 206  index1  109  path  185  %Seq 100.00 Highlighted IDENTICAL residue LEU 207  index1  110  path  186  %Seq 100.00 Highlighted IDENTICAL residue GLU 208  index1  111  path  187  %Seq 100.00 Highlighted IDENTICAL residue TYR 219  index1  122  path  200  %Seq 100.00 Highlighted IDENTICAL residue GLU 222  index1  125  path  203  %Seq 100.00 Highlighted IDENTICAL residue VAL 225  index1  128  path  206  %Seq 100.00 Highlighted IDENTICAL residue ALA 226  index1  129  path  207  %Seq 100.00 Highlighted IDENTICAL residue ARG 227  index1  130  path  208  %Seq 100.00 Highlighted IDENTICAL residue GLY 233  index1  136  path  214  %Seq  50.00 Highlighted IDENTICAL residue GLN 1093 index1  137  path  215  %Seq  50.00 Highlighted IDENTICAL residue LEU 1094 index1  138  path  216  %Seq  50.00 Highlighted IDENTICAL residue VAL 1095 index1  139  path  217  %Seq  50.00 Highlighted IDENTICAL residue GLU 1096 index1  140  path  218  %Seq  50.00 Highlighted IDENTICAL residue GLU 1097 index1  141  path  219  %Seq  50.00 Highlighted IDENTICAL residue GLU 1098 index1  142  path  220  %Seq  50.00 Highlighted IDENTICAL residue LEU 1099 index1  143  path  221  %Seq  50.00 Highlighted IDENTICAL residue ASP 1100 index1  144  path  222  %Seq  50.00 Highlighted IDENTICAL residue ARG 1101 index1  145  path  223  %Seq  50.00 Highlighted IDENTICAL residue ALA 1102 index1  146  path  224  %Seq  50.00 Highlighted IDENTICAL residue GLN 1103 index1  147  path  225  %Seq  50.00 Highlighted IDENTICAL residue GLU 1104 index1  148  path  226  %Seq  50.00 Highlighted IDENTICAL residue ARG 1105 index1  149  path  227  %Seq  50.00 Highlighted IDENTICAL residue LEU 1106 index1  150  path  228  %Seq  50.00 Highlighted IDENTICAL residue ALA 1107 index1  151  path  229  %Seq  50.00 Highlighted IDENTICAL residue THR 1108 index1  152  path  230  %Seq  50.00 Highlighted IDENTICAL residue ALA 1109 index1  153  path  231  %Seq  50.00 Highlighted IDENTICAL residue LEU 1110 index1  154  path  232  %Seq  50.00 Highlighted IDENTICAL residue GLN 1111 index1  155  path  233  %Seq  50.00 Highlighted IDENTICAL residue LYS 1112 index1  156  path  234  %Seq  50.00 Highlighted IDENTICAL residue LEU 1113 index1  157  path  235  %Seq  50.00 Highlighted IDENTICAL residue GLU 1114 index1  158  path  236  %Seq  50.00 Highlighted IDENTICAL residue GLU 1115 index1  159  path  237  %Seq  50.00 Highlighted IDENTICAL residue ALA 1116 index1  160  path  238  %Seq  50.00 Highlighted IDENTICAL residue GLU 1117 index1  161  path  239  %Seq  50.00 Highlighted IDENTICAL residue LYS 1118 index1  162  path  240  %Seq  50.00 Highlighted IDENTICAL residue ALA 1119 index1  163  path  241  %Seq  50.00 Highlighted 44 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g12900-2b9cB.pir.txt.2B9C.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g12900-2b9cB.pir.txt PIR amino_acid 2B9C.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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