At2g04270.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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=========================================

Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g04270-1-2bx2L.pir.txt

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=========================================

Assigned types to 996 residues in Sequence 2-4270-1, 14 remain unknown Assigned types to 515 residues in Sequence 2bx2L, 495 remain unknown

=
=========================================

Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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=========================================

Translated sequence file At2g04270-1-2bx2L.pir.txt into sequence alignment.

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=========================================

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code Unknown 3-letter code U for amino acid

>2BX2.pdb Made from 4076 ATOM records in 2BX2.pdb AHIEGRHMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYK GKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPRPNIKDVLREGQEV IVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIELKEALA SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS ARGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT GTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVN AIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM XXXXXXXXXXXXXX

=
=========================================

Best alignment: 2BX2.pdb   94  LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG---GIS   140 +R+G ++IVQ+ KE G KG  LT +  L   + VL+    R G    IS 2-4270-1   534  VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKIS   583

2BX2.pdb  140  --RRIELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW---   185 R LK    +L+ P+G GL VRT   G S E LQ DL   L  W   2-4270-1   584  GVERTRLKVIAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNI   632

2BX2.pdb  185  -EAIKKAAE--SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP   228 A  A E      P L+H+     +   +DY    + ++++D+P 2-4270-1  633  TDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP   682

2BX2.pdb  229  KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR   278 +      ++  +  PD  ++++L+   IPLF  Y+IE +IE    + V 2-4270-1   683  RTYHEVTHYLQDMA-PDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVP   731

2BX2.pdb  279  LPSGGSIVIDSTEALTAIDINSA-RGDIEETA-FNTNLEAADEIAR   322 L +GGS+VI+ TEAL +ID+N      +G+ +E A    NL AA +IAR 2-4270-1  732  LSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR   781

2BX2.pdb  323  QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF   372 ++RLRD+GG+IV+DFIDM   ++R V   +++AV +DR+ +++S +SR 2-4270-1  782  EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRH   831

2BX2.pdb  373  GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES   408 GL+E++R+R+ PS+      C  C  TG V   E+ 2-4270-1   832  GLMEITRKRVRPSVTFMISEPCSCCHATGRVEALET   867

=
=========================================

Highlighted IDENTICAL residue ARG  95  index1   95  path  545  %Seq 100.00 Highlighted IDENTICAL residue GLY  97  index1   97  path  547  %Seq 100.00 Highlighted IDENTICAL residue ILE 101  index1  101  path  551  %Seq 100.00 Highlighted IDENTICAL residue VAL 102  index1  102  path  552  %Seq 100.00 Highlighted IDENTICAL residue GLN 103  index1  103  path  553  %Seq 100.00 Highlighted IDENTICAL residue LYS 106  index1  106  path  556  %Seq 100.00 Highlighted IDENTICAL residue GLU 107  index1  107  path  557  %Seq 100.00 Highlighted IDENTICAL residue GLY 110  index1  110  path  560  %Seq 100.00 Highlighted IDENTICAL residue LYS 112  index1  112  path  562  %Seq 100.00 Highlighted IDENTICAL residue GLY 113  index1  113  path  563  %Seq 100.00 Highlighted IDENTICAL residue LEU 116  index1  116  path  566  %Seq 100.00 Highlighted IDENTICAL residue THR 117  index1  117  path  567  %Seq 100.00 Highlighted IDENTICAL residue LEU 122  index1  122  path  572  %Seq 100.00 Highlighted IDENTICAL residue VAL 128  index1  128  path  578  %Seq 100.00 Highlighted IDENTICAL residue LEU 129  index1  129  path  579  %Seq 100.00 Highlighted IDENTICAL residue ARG 135  index1  135  path  585  %Seq 100.00 Highlighted IDENTICAL residue GLY 137  index1  137  path  588  %Seq 100.00 Highlighted IDENTICAL residue ILE 139  index1  139  path  593  %Seq 100.00 Highlighted IDENTICAL residue ARG 142  index1  142  path  598  %Seq 100.00 Highlighted IDENTICAL residue ILE 143  index1  143  path  599  %Seq 100.00 Highlighted IDENTICAL residue LEU 151  index1  145  path  601  %Seq 100.00 Highlighted IDENTICAL residue LYS 152  index1  146  path  602  %Seq 100.00 Highlighted IDENTICAL residue LEU 158  index1  152  path  608  %Seq 100.00 Highlighted IDENTICAL residue PRO 161  index1  155  path  611  %Seq 100.00 Highlighted IDENTICAL residue GLY 163  index1  157  path  613  %Seq 100.00 Highlighted IDENTICAL residue GLY 165  index1  159  path  615  %Seq 100.00 Highlighted IDENTICAL residue LEU 166  index1  160  path  616  %Seq 100.00 Highlighted IDENTICAL residue VAL 168  index1  162  path  618  %Seq 100.00 Highlighted IDENTICAL residue ARG 169  index1  163  path  619  %Seq 100.00 Highlighted IDENTICAL residue THR 170  index1  164  path  620  %Seq 100.00 Highlighted IDENTICAL residue GLY 174  index1  168  path  624  %Seq 100.00 Highlighted IDENTICAL residue SER 176  index1  170  path  626  %Seq 100.00 Highlighted IDENTICAL residue GLU 178  index1  172  path  628  %Seq 100.00 Highlighted IDENTICAL residue LEU 180  index1  174  path  630  %Seq 100.00 Highlighted IDENTICAL residue GLN 181  index1  175  path  631  %Seq 100.00 Highlighted IDENTICAL residue ASP 183  index1  177  path  633  %Seq 100.00 Highlighted IDENTICAL residue LEU 184  index1  178  path  634  %Seq 100.00 Highlighted IDENTICAL residue LEU 188  index1  182  path  638  %Seq 100.00 Highlighted IDENTICAL residue TRP 191  index1  185  path  641  %Seq 100.00 Highlighted IDENTICAL residue GLU 192  index1  186  path  650  %Seq 100.00 Highlighted IDENTICAL residue ILE 194  index1  188  path  652  %Seq  50.00 Highlighted IDENTICAL residue LYS 195  index1  189  path  653  %Seq  50.00 Highlighted IDENTICAL residue LYS 196  index1  190  path  654  %Seq  50.00 Highlighted IDENTICAL residue ALA 197  index1  191  path  655  %Seq  50.00 Highlighted IDENTICAL residue ALA 198  index1  192  path  656  %Seq  50.00 Highlighted IDENTICAL residue GLU 199  index1  193  path  657  %Seq  50.00 Highlighted IDENTICAL residue SER 200  index1  194  path  660  %Seq  50.00 Highlighted IDENTICAL residue ARG 201  index1  195  path  661  %Seq  50.00 Highlighted IDENTICAL residue PRO 204  index1  198  path  664  %Seq 100.00 Highlighted IDENTICAL residue LEU 206  index1  200  path  666  %Seq 100.00 Highlighted IDENTICAL residue HIS 208  index1  202  path  668  %Seq 100.00 Highlighted IDENTICAL residue ASP 220  index1  214  path  680  %Seq 100.00 Highlighted IDENTICAL residue TYR 221  index1  215  path  681  %Seq 100.00 Highlighted IDENTICAL residue ASP 232  index1  226  path  692  %Seq 100.00 Highlighted IDENTICAL residue PRO 234  index1  228  path  694  %Seq 100.00 Highlighted IDENTICAL residue PRO 250  index1  244  path  710  %Seq 100.00 Highlighted IDENTICAL residue ASP 251  index1  245  path  711  %Seq 100.00 Highlighted IDENTICAL residue LEU 258  index1  252  path  718  %Seq 100.00 Highlighted IDENTICAL residue ILE 263  index1  257  path  723  %Seq 100.00 Highlighted IDENTICAL residue PRO 264  index1  258  path  724  %Seq 100.00 Highlighted IDENTICAL residue LEU 265  index1  259  path  725  %Seq 100.00 Highlighted IDENTICAL residue PHE 266  index1  260  path  726  %Seq 100.00 Highlighted IDENTICAL residue TYR 269  index1  263  path  729  %Seq 100.00 Highlighted IDENTICAL residue ILE 271  index1  265  path  731  %Seq 100.00 Highlighted IDENTICAL residue GLU 272  index1  266  path  732  %Seq 100.00 Highlighted IDENTICAL residue ILE 275  index1  269  path  735  %Seq 100.00 Highlighted IDENTICAL residue GLU 276  index1  270  path  736  %Seq 100.00 Highlighted IDENTICAL residue VAL 283  index1  277  path  743  %Seq 100.00 Highlighted IDENTICAL residue LEU 285  index1  279  path  745  %Seq 100.00 Highlighted IDENTICAL residue GLY 288  index1  282  path  748  %Seq 100.00 Highlighted IDENTICAL residue GLY 289  index1  283  path  749  %Seq 100.00 Highlighted IDENTICAL residue SER 290  index1  284  path  750  %Seq 100.00 Highlighted IDENTICAL residue VAL 292  index1  286  path  752  %Seq 100.00 Highlighted IDENTICAL residue ILE 293  index1  287  path  753  %Seq 100.00 Highlighted IDENTICAL residue THR 296  index1  290  path  756  %Seq 100.00 Highlighted IDENTICAL residue GLU 297  index1  291  path  757  %Seq 100.00 Highlighted IDENTICAL residue ALA 298  index1  292  path  758  %Seq 100.00 Highlighted IDENTICAL residue LEU 299  index1  293  path  759  %Seq 100.00 Highlighted IDENTICAL residue ILE 302  index1  296  path  762  %Seq 100.00 Highlighted IDENTICAL residue ASP 303  index1  297  path  763  %Seq 100.00 Highlighted IDENTICAL residue ASN 305  index1  299  path  765  %Seq 100.00 Highlighted IDENTICAL residue GLY 313  index1  303  path  774  %Seq 100.00 Highlighted IDENTICAL residue GLU 317  index1  307  path  778  %Seq 100.00 Highlighted IDENTICAL residue ASN 323  index1  313  path  785  %Seq 100.00 Highlighted IDENTICAL residue LEU 324  index1  314  path  786  %Seq 100.00 Highlighted IDENTICAL residue ALA 326  index1  316  path  788  %Seq 100.00 Highlighted IDENTICAL residue ALA 327  index1  317  path  789  %Seq 100.00 Highlighted IDENTICAL residue ILE 330  index1  320  path  792  %Seq 100.00 Highlighted IDENTICAL residue ALA 331  index1  321  path  793  %Seq 100.00 Highlighted IDENTICAL residue ARG 332  index1  322  path  794  %Seq 100.00 Highlighted IDENTICAL residue ARG 335  index1  325  path  797  %Seq 100.00 Highlighted IDENTICAL residue LEU 336  index1  326  path  798  %Seq 100.00 Highlighted IDENTICAL residue ARG 337  index1  327  path  799  %Seq 100.00 Highlighted IDENTICAL residue ASP 338  index1  328  path  800  %Seq 100.00 Highlighted IDENTICAL residue GLY 340  index1  330  path  802  %Seq 100.00 Highlighted IDENTICAL residue GLY 341  index1  331  path  803  %Seq 100.00 Highlighted IDENTICAL residue ILE 343  index1  333  path  805  %Seq 100.00 Highlighted IDENTICAL residue VAL 344  index1  334  path  806  %Seq 100.00 Highlighted IDENTICAL residue ASP 346  index1  336  path  808  %Seq 100.00 Highlighted IDENTICAL residue PHE 347  index1  337  path  809  %Seq 100.00 Highlighted IDENTICAL residue ILE 348  index1  338  path  810  %Seq 100.00 Highlighted IDENTICAL residue ASP 349  index1  339  path  811  %Seq 100.00 Highlighted IDENTICAL residue MET 350  index1  340  path  812  %Seq 100.00 Highlighted IDENTICAL residue ARG 357  index1  347  path  819  %Seq 100.00 Highlighted IDENTICAL residue VAL 359  index1  349  path  821  %Seq 100.00 Highlighted IDENTICAL residue ALA 366  index1  356  path  828  %Seq 100.00 Highlighted IDENTICAL residue VAL 367  index1  357  path  829  %Seq 100.00 Highlighted IDENTICAL residue ASP 370  index1  360  path  832  %Seq 100.00 Highlighted IDENTICAL residue ARG 371  index1  361  path  833  %Seq 100.00 Highlighted IDENTICAL residue SER 377  index1  367  path  839  %Seq 100.00 Highlighted IDENTICAL residue SER 380  index1  370  path  842  %Seq 100.00 Highlighted IDENTICAL residue ARG 381  index1  371  path  843  %Seq 100.00 Highlighted IDENTICAL residue GLY 383  index1  373  path  845  %Seq 100.00 Highlighted IDENTICAL residue LEU 384  index1  374  path  846  %Seq 100.00 Highlighted IDENTICAL residue GLU 386  index1  376  path  848  %Seq 100.00 Highlighted IDENTICAL residue ARG 389  index1  379  path  851  %Seq 100.00 Highlighted IDENTICAL residue ARG 391  index1  381  path  853  %Seq 100.00 Highlighted IDENTICAL residue PRO 394  index1  384  path  856  %Seq 100.00 Highlighted IDENTICAL residue SER 395  index1  385  path  857  %Seq 100.00 Highlighted IDENTICAL residue CYS 404  index1  394  path  866  %Seq 100.00 Highlighted IDENTICAL residue CYS 407  index1  397  path  869  %Seq 100.00 Highlighted IDENTICAL residue THR 410  index1  400  path  872  %Seq 100.00 Highlighted IDENTICAL residue GLY 411  index1  401  path  873  %Seq 100.00 Highlighted IDENTICAL residue VAL 413  index1  403  path  875  %Seq 100.00 Highlighted IDENTICAL residue GLU 417  index1  407  path  879  %Seq 100.00 Highlighted 125 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g04270-1-2bx2L.pir.txt.2BX2.pdb.conservation.pml

=
==================================================================

The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g04270-1-2bx2L.pir.txt PIR amino_acid 2BX2.pdb A 100.0 BLOSUM62.dat

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@