At2g13680.1/PDB C-terminus

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g13680-C-2ckj_A.pir.txt

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Assigned types to 943 residues in Sequence 2-13680-C, 47 remain unknown Assigned types to 523 residues in Sequence 2ckj_A, 467 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 143 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 144 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 145 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 146 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 147 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 179 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 180 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 181 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 182 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 183 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 184 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 185 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 186 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 187 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 188 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 189 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 201 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 202 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 203 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 283 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 326 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 327 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 328 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 329 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 330 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 331 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 332 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 333 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 334 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 335 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 336 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 337 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 338 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 339 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 340 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 341 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 342 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 343 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 344 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 345 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 346 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 403 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 573 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 574 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 575 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 638 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 639 All residues are positively and negatively charged

Translated sequence file At2g13680-C-2ckj_A.pir.txt into sequence alignment.

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>2CKJ.pdb Made from 39530 ATOM records in 2CKJ.pdb ADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLSGTKLGCGEGGCGACT VMLSKYDRLQNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQ ERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTMEEIENAFQGNLCRCTG YRPILQGFRTFARPSLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQLRF EGERVTWIQASTLKELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPMIV CPAWIPELNSVEHGPDGISFGAACPLSIVEKTLVDAVAKLPAQKTEVFRG VLEQLRWFAGKQVKSVASVGGNIITASPISDLNPVFMASGAKLTLVSRGT RRTVQMDHTFFPGYRKTLLSPEEILLSIEIPYSREGEYFSAFKQASDIAK VTSGMRVLFKPGTTEVQELALCYGGMANRTISALKTTQRQLSKLWKEELL QDVCAGLAEELHLPPDAPGGMVDFRCTLTLSFFFKFYLTVLQKLGQENLE VQLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYENELSLR LVTSTRAHAKIKSIDTSEAKKVPGFVCFISADDVPGSNITGICNDETVFA KDKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEELPAIITIEDAIKNNS FYGPELKIEKGDLKKGFSEADNVVSGEIYIGGQEHFYLETHCTIAVPKGE AGEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGKETRST VVSTAVALAAYKTGRPVRCMLDRDEDMLITGGRHPFLARYKVGFMKTGTV VALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGTGRLCKTNLP SNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFN QKLEGFTLPRCWEECLASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFG ISFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKI PTSKIYISETSTNTVPNTSPTAASVSADLNGQAVYAACQTILKRLEPYKK KNPSGSWEDWVTAAYMDTVSLSATGFYRTPNLGYSFETNSGNPFHYFSYG VACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLF TLEELHYSPEGSLHTRGPSTYKIPAFGSIPIEFRVSLLRDCPNKKAIYAS KAVGEPPLFLAASIFFAIKDAIRAARAQHTGNNVKELFRLDSPATPEKIR NACVDKFTTLCVTWTADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLS GTKLGCGEGGCGACTVMLSKYDRLQNKIVHFSANACLAPICSLHHVAVTT VEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTME EIENAFQGNLCRCTGYRPILQGFRTFARPSLFKPEEFTPLDPTQEPIFPP ELLRLKDTPRKQLRFEGERVTWIQASTLKELLDLKAQHPDAKLVVGNTEI GIEMKFKNMLFPMIVCPAWIPELNSVEHGPDGISFGAACPLSIVEKTLVD AVAKLPAQKTEVFRGVLEQLRWFAGKQVKSVASVGGNIITASPISDLNPV FMASGAKLTLVSRGTRRTVQMDHTFFPGYRKTLLSPEEILLSIEIPYSRE GEYFSAFKQASRREDDIAKVTSGMRVLFKPGTTEVQELALCYGGMANRTI SALKTTQRQLSKLWKEELLQDVCAGLAEELHLPPDAPGGMVDFRCTLTLS FFFKFYLTVLQKLGQENLEDKCGKLDPTFASATDVQLFQEVPKGQSEEDM VGRPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDT SEAKKVPGFVCFISADDVPGSNITGICNDETVFAKDKVTCVGHIIGAVVA DTPEHTQRAAQGVKITYEELPAIITIEDAIKNNSFYGPELKIEKGDLKKG FSEADNVVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKT QSFVAKMLGVPANRIVVRVKRMGGGFGGKETRSTVVSTAVALAAYKTGRP VRCMLDRDEDMLITGGRHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQD LSQSIMERALFHMDNCYKIPNIRGTGRLCKTNLPSNTAFRGFGGPQGMLI AECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQKLEGFTLPRCWEECL ASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALLH VYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIYISETSTNTVP NTSPTAASVSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYM DTVSLSATGFYRTPNLGYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHK NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTR GPSTYKIPAFGSIPIEFRVSLLRDCPNKKAIYASKAVGEPPLFLAASIFF AIKDAIRAARAQHTGNNVKELFRLDSPATPEKIRNACVDKFTTLCVCKPW SVRADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLSGTKLGCGEGGCG ACTVMLSKYDRLQNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLH PVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTMEEIENAFQGNLCR CTGYRPILQGFRTFARPSLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQ LRFEGERVTWIQASTLKELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFP MIVCPAWIPELNSVEHGPDGISFGAACPLSIVEKTLVDAVAKLPAQKTEV FRGVLEQLRWFAGKQVKSVASVGGNIITASPISDLNPVFMASGAKLTLVS RGTRRTVQMDHTFFPGYRKTLLSPEEILLSIEIPYSREGEYFSAFKQASR REAKVTSGMRVLFKPGTTEVQELALCYGGMANRTISALKTTQRQLSKLWK EELLQDVCAGLAEELHLPPDAPGGMVDFRCTLTLSFFFKFYLTVLQKLGQ ENLEDKCGKLDPTFASATDVQLFQEVPKGQSEEDMVGRPLPHLAADMQAS GEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEAKKVPGFVCFISA DDVPGSNITGICNDETVFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKI TYEELPAIITIEDAIKNNSFYGPELKIEKGDLKKGFSEADNVVSGEIYIG GQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPANRI VVRVKRMGGGFGGKETRSTVVSTAVALAAYKTGRPVRCMLDRDEDMLITG GRHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDN CYKIPNIRGTGRLCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMP AEEVRRKNLYKEGDLTHFNQKLEGFTLPRCWEECLASSQYHARKSEVDKF NKENCWKKRGLCIIPTKFGISFTVPFLNQAGALLHVYTDGSVLLTHGGTE MGQGLHTKMVQVASRALKIPTSKIYISETSTNTVPNTSPTAASVSADLNG QAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTVSLSATGFYRTPN LGYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLN PAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPI EFRVSLLRDCPNKKAIYASKAVGEPPLFLAASIFFAIKDAIRAARAQHTG NNVKELFRLDSPATPEKIRNACVDKFTTLCVPWSVRADKLVFFVNGRKVV EKNADPETTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDRLQNKIV HFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFC TPGIVMSMYTLLRNQPEPTMEEIENAFQGNLCRCTGYRPILQGFRTFARP SLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQLRFEGERVTWIQASTLK ELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPMIVCPAWIPELNSVEHG PDGISFGAACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWFAGKQVK SVASVGGNIITASPISDLNPVFMASGAKLTLVSRGTRRTVQMDHTFFPGY RKTLLSPEEILLSIEIPYSREGEYFSAFKQASRREDDIAKVTSGMRVLFK PGTTEVQELALCYGGMANRTISALKTTQRQLSKLWKEELLQDVCAGLAEE LHLPPDAPGGMVDFRCTLTLSFFFKFYLTVLQKLGQENLEDKCGKLDPDV QLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYENELSLRL VTSTRAHAKIKSIDTSEAKKVPGFVCFISADDVPGSNITGICNDETVFAK DKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEELPAIITIEDAIKNNSF YGPELKIEKGDLKKGFSEADNVVSGEIYIGGQEHFYLETHCTIAVPKGEA GEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGKETRSTV VSTAVALAAYKTGRPVRCMLDRDEDMLITGGRHPFLARYKVGFMKTGTVV ALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGTGRLCKTNLPS NTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQ KLEGFTLPRCWEECLASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFGI SFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIP TSKIYISETSTNTVPNTSPTAASVSADLNGQAVYAACQTILKRLEPYKKK NPSGSWEDWVTAAYMDTVSLSATGFYRTPNLGYSFETNSGNPFHYFSYGV ACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFT LEELHYSPEGSLHTRGPSTYKIPAFGSIPIEFRVSLLRDCPNKKAIYASK AVGEPPLFLAASIFFAIKDAIRAARAQHTGNNVKELFRLDSPATPEKIRN ACVDKFTTLCVTCKPWSVR

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Best alignment: 2CKJ.pdb   294  KTEVFRGVLEQLRWFAGKQVKSVASVGGNIITASPI   329 + +F G +  L WF   Q  S  ++G  ++ ASP+ 2-13680-C  368  REHIFTGSVSSLAWFMSNQETSFVTIGQRVL-ASPL   402

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Highlighted IDENTICAL residue VAL 326  index1  297  path  413  %Seq 100.00 Highlighted IDENTICAL residue VAL 330  index1  301  path  417  %Seq 100.00 Highlighted IDENTICAL residue GLU 332  index1  303  path  419  %Seq  50.00 Highlighted IDENTICAL residue GLN 333  index1  304  path  420  %Seq  50.00 Highlighted IDENTICAL residue LEU 334  index1  305  path  421  %Seq  50.00 Highlighted IDENTICAL residue ARG 335  index1  306  path  422  %Seq  50.00 Highlighted IDENTICAL residue TRP 336  index1  307  path  423  %Seq  50.00 Highlighted 7 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g13680-C-2ckj_A.pir.txt.2CKJ.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g13680-C-2ckj_A.pir.txt PIR amino_acid 2CKJ.pdb _ 100.0 BLOSUM62.dat

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@