At2g11090.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

=
=========================================

Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g11090-1wisA.pir.txt

=
=========================================

Assigned types to 151 residues in Sequence 2-11090, 13 remain unknown Assigned types to 86 residues in Sequence 1wisA, 78 remain unknown

=
=========================================

Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

=
=========================================

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 44 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 45 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 46 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 47 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 68 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 69 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 70 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 71 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 102 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 103 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 104 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 105 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 106 All residues are positively and negatively charged

Translated sequence file At2g11090-1wisA.pir.txt into sequence alignment.

=
=========================================

>1WIS.pdb Made from 1830 ATOM records in 1WIS.pdb GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISR WLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVN IVGTSPPSQPSRKIQTLQSGPSSG

=
=========================================

Best alignment: 1WIS.pdb   70  HQLSNEPDAR    79 HQ + P  R 2-11090     16  HQQTTRPRGR    25

=
=========================================

Highlighted IDENTICAL residue HIS  70  index1   70  path   16  %Seq  50.00 Highlighted IDENTICAL residue GLN  71  index1   71  path   17  %Seq  50.00 Highlighted IDENTICAL residue LEU  72  index1   72  path   18  %Seq  50.00 Highlighted IDENTICAL residue SER  73  index1   73  path   19  %Seq  50.00 Highlighted IDENTICAL residue ASN  74  index1   74  path   20  %Seq  50.00 Highlighted IDENTICAL residue GLU  75  index1   75  path   21  %Seq  50.00 Highlighted IDENTICAL residue PRO  76  index1   76  path   22  %Seq  50.00 Highlighted IDENTICAL residue ASP  77  index1   77  path   23  %Seq  50.00 Highlighted IDENTICAL residue ALA  78  index1   78  path   24  %Seq  50.00 Highlighted IDENTICAL residue ARG  79  index1   79  path   25  %Seq  50.00 Highlighted 10 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g11090-1wisA.pir.txt.1WIS.pdb.conservation.pml

=
==================================================================

The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g11090-1wisA.pir.txt PIR amino_acid 1WIS.pdb _ 100.0 BLOSUM62.dat

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@