At2g01110.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/at2g01110_C1kgpa.pir.txt

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Assigned types to 340 residues in Sequence 2-01110, 63 remain unknown Assigned types to 296 residues in Sequence c1kgpa_, 107 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file at2g01110_C1kgpa.pir.txt into sequence alignment.

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>1KGP.pdb Made from 9676 ATOM records in 1KGP.pdb SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSND IQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVY TNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSY YNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRD ESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY DDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSSNEY DEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSW NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIA FMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGD DPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVH GYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLG WTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSSNEYDEYI ANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMT PQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMES VHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLK KKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYI GYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTED VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSSNEYDEYIANHT DPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQ LATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAK SYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVA STLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKY QQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRF LRYNANKALNNLGYEGLFPTDETKVSPAILSSLS

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Best alignment: 1KGP.pdb   23  IPDEKDLEVWDRL    35 +PD+K++ ++D L 2-01110   105  LPDDKEMTIFDHL   117

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Highlighted IDENTICAL residue PRO  25  index1   24  path  123  %Seq 100.00 Highlighted 1 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/at2g01110_C1kgpa.pir.txt.1KGP.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues at2g01110_C1kgpa.pir.txt PIR amino_acid 1KGP.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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