At2g03540.1/MSA

>gi|15227661|ref|NP_178452.1|	  166 residues, 50 /line  unknown protein [Arabidopsis thaliana]

-MIDMGISRTSTVLEAWTNRRRRRHRVDCLRSMEEM LALKRNSRT-NEQDRVLWKGKNGHLESHT-HNGEQGFLAQKGLICASYTETC VLH- ---VWR-- ---DKVDGLLARYVLQATIYTIWRERNERKHGTGL-NSAN RLIKWIDRHIRNQLSVLKISGDHRYN--KGLQVW-- F--TSRGI --N >gi|10177359|dbj|BAB10650.1|	  76 residues, 50 /line  unnamed protein product [Arabidopsis thaliana]

---MQH-NRIERFLARYILQASVYTLWRERNGRRHGEDP-NPAA RLIRWIDKQMRNALSSIKEMGDRRYD--TGLQLW-- F--ATAN- --- >gi|116830389|gb|ABK28152.1|	  196 residues, 50 /line  unknown [Arabidopsis thaliana]

--MALLTKVTWNNIGMHQPQTNWYKGVWFPYSTPKY SFLLWLTIQNRLSTGDHIKAWNSGQQVTCTLCGNAEETRNLLF---FSC-HY TSEVWRT--LTQRLLSND---YSRDWNRLLPL LCNTNM-PTDLLFLFRYVFQASVYHIWRERNARRHGEIS-SPPN RLIKFIDKNVRNRINSIRDTGDHNYN--ACLQLW-- F--STRPL SSTHSLG >gi|116830665|gb|ABK28290.1|	  84 residues, 50 /line  unknown [Arabidopsis thaliana]

---MHHF-

IISKSS-NLVLPSCTDYFFQATVYSIWLERNKRRHSEPP-STAD QVIKFLDRIIRNKISSIHRTNPRKHE--DGFRVW-- V--DSRNG --- >gi|15223191|ref|NP_174517.1|	  192 residues, 50 /line  unknown protein [Arabidopsis thaliana] ---MK--- LQRSCYVRILNEFEEI LLQKYQQRNIEREEAILWRGKADVFKATFSTKDTWNHIRTSSNQRAWHTGVWFAHATPKF SFCAWLAVRNRLSMVDRMMTWNNGTPTTCVFCSSPMETRDHLF---FQC-HY SSEIWTS--IAKNVYKDG---FSTDWSAVVNY ISDSQP-DCIQNFLSRYTFQVSIHSITVRRHVQLQ-TSCD R---

--- >gi|8920614|gb|AAF81336.1|AC007767_16	  206 residues, 50 /line  Strong similarity to a putative non-LTR retroelement reverse transcriptase At2g23880 gi|3738337 from Arabidopsis thaliana BAC F27L4 gb|AC005170 ---MK--- LQRSCYVRILNEFEEI LLQKYQQRNIEREEAILWRGKADVFKATFSTKDTWNHIRTSSNQRAWHTGVWFAHATPKF SFCAWLAVRNRLSMVDRMMTWNNGTPTTCVFCSSPMETRDHLF---FQC-HY SSEIWTS--IAKNVYKDG---FSTDWSAVVHI PS---LHSFNHGEAS-RSAS NLMRQIDKTIRNQLSTIQKKGELRLE--KGLQVW-- F--AMR-P --- >gi|9665166|gb|AAF97350.1|AC021045_7	  176 residues, 50 /line  Hypothetical Protein [Arabidopsis thaliana]

MGIPLVATLATVLQTHRSRRHRAELYNKI-EA EIQRLQQQVQEAEKLVQGR--LVPLLHAQVLL HFVARNT-QQTFNRRSHQN---MEL-RY SSEVWEN--LAQRLLSTD---YSSHWNHLIAK ES--ALPVPRNARRHGELS-LPSN RLIKLIDKTVRNRISSIRDTGNHSYN--TCLQLW-- F--STRPR SSLQL-L >gi|5454197|gb|AAD43612.1|AC005698_11	  103 residues, 50 /line  T3P18.11 [Arabidopsis thaliana]

MGIQFVMF EIHSKWVGTV-- -LAGRVKLPSQDNMIE DITIWAA--LAKGLWKSR---YTTSCPQILAH VSAPDQ-DRLEGFLLRYVFQATVYTVWRER-- -MDDDISNHRTHRL--

--N >gi|15221947|ref|NP_175893.1|	  137 residues, 50 /line  unknown protein [Arabidopsis thaliana]

-MMKWIGGATGTCVLCDNNIETRDHLF---FSC-PF VSEIWAV--IAKGIFKDK---YSTDWSQLLDH VSNANQ-TQLESFLSRSAFQATVYTIWGERNGRRHGEEP-HSTT LLTTWIDKHIRNKISTIRRMGDRRYD--EAYQAW-- L--ISR-T --- >gi|89274225|gb|ABD65629.1|	  147 residues, 50 /line  hypothetical protein 23.t00046 [Brassica oleracea]

---MQGRLSTGDRMRGWNMNVDTSCVLCQEPLETADHLF---FKC-PY STQIWEA--LMKGVMESR---FTMEWERIITF LRESSNWSKVKLFVSRYILQSTVHAIWMERNRRKHNELP-SPSV VLIKRLDKNMRNRLTILQRRGDKELA--EGMTFW-- F--GSR-- --- >gi|15218634|ref|NP_174704.1|	  157 residues, 50 /line  unknown protein [Arabidopsis thaliana]

--MADGKNVVKG

--LAAR-NRNITLILKLIFPASLYFIWRERNQRLHSATS-RPTT SIIKEIKMIVRTRLDPLSRAQRSTPPALTLLATWL--GFIGFTLCLDLPLAAGAAS SCFGPRPCLFLFQRRRKDKVSSRIIYSDQLIFYNVIEAGLAPVTIVDWF--CPL-R --- >gi|8778252|gb|AAF79261.1|AC023279_10	  142 residues, 50 /line  F12K21.23 [Arabidopsis thaliana]

--MADGKNVVKG

--LAAR-NRNITLILKLIFPASLYFIWRERNQRLHSATS-RPTT SIIKEIKMIVRTRLDPLSRAQRSTPPALTLLATCCCFFCRLGFIGFTLCLDLPLAAGAAS SCFGPRPCLFLFQ---VCVPLLGIYHICYVFLVK-I --- >gi|22328361|ref|NP_680600.1|	  138 residues, 50 /line  unknown protein [Arabidopsis thaliana]

-MRRWGLSIPSDCVLCSGNAEFREHLF---FGC-GV SFAVWGN--FMFRASLTP---PLL-FMDCLTW VLSPSR-DPNISLIIKLVFQASIYFLWKERNRRLHDHAS-RSST AIIKEIKVILTAKLDPLSRRSEFDAPDNSLLSTW-- F--RYF-N --- >gi|9755378|gb|AAF98185.1|AC000107_8	  86 residues, 50 /line  F17F8.11 [Arabidopsis thaliana]

MI-KSIESFIARYVFQATLYTIWCERNGRRHGEREAEPAA LLIKLIDKQ---AIFPQS-- ---EQLMIYAMTRASKSGLHRVVEIKPSIVHVFN-L --- >gi|15239791|ref|NP_199720.1|	  116 residues, 50 /line  unknown protein [Arabidopsis thaliana]

---MQKMCDASWNDETTSS---SFC-AY TSEIWEA--LAKNILKRS---YTTDWHNLIIS VSDQRH-NTIEGFLARSVLQALVYTIWRERNVRRHGESP-KPAA RFIQWINKHIRNTFSVIKRMRDKKYD--

--- >gi|15226989|ref|NP_178356.1|	  211 residues, 50 /line  unknown protein [Arabidopsis thaliana]

--MEMQMEIGIGYNADP--- -ILERNKEI-DLE-ATATWLHLNPIGERVDWFKAIWFKGKIPKH AFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLF---FDC-EF AREVWIY--FTSRVHVFP---PLL-FEDGIRW LKNPCQ-DKNVTTILRLSHHASVYTIWKERNARLHDSAS-RPAA ALILEIKSVIRCHLDPLSRAQRLGPNRISFLATW-- F--GLF-D --- >gi|22331328|ref|NP_683592.1|	  153 residues, 50 /line  unknown protein [Arabidopsis thaliana] --M- RNVMFPYEIG---NRNP--- -IIQML-- --NNCLPVSNVVNLQDDAEDDLF---L-W-KF AREVWNY--FTSRAHVSP---PHL-FGDGVRW LKNPCH-DKNVTMILRIAHQASVYTLWKERNSRLNNATS-RPAA GIILEIKALIRCHLDPLSRAQRLGHQGTSFLATW-- F--GMFNA --- >gi|9802599|gb|AAF99801.1|AC012463_18	  165 residues, 50 /line  T2E6.13 [Arabidopsis thaliana]

-MKPC-CEA-CCFSLCHMEKM---KPCW ---LSTGDRMQFWNNGSDVKCTFCSTSIETRDHLF---FSC-SY ASSIWTA--IAKNVLQHR---FSTDWQAIVNY ISETQT-DRIRSFLSRYIFQLTVHTVWKERNDRRHGEEP-RTSA NLISWMDKQIRNQLSIIISTGDRRYE--NGLQVW-- F--STR-L --- >gi|79348531|ref|NP_173555.2|	  152 residues, 50 /line  unknown protein [Arabidopsis thaliana]

--MTWLAVRNRLSTGDRMLQWNMGVNSCCVFCHAPVETRNHLF---FAC-QY SADVWTG--LSRKLLSQR---FSTDWDMIIKL ITDTSL-GKGCLFLVRYTFQLTVHSIWKERNGHRHGEAP-IPSS QLTRRLDKQTRNRISSIRELGDRRYED-YGDLVW-- L--KI--T --- >gi|15219641|ref|NP_174790.1|	  236 residues, 50 /line  unknown protein [Arabidopsis thaliana] ---MEEPLRQE- SPTTFHAKTSDRGQIDLGISKHKTVAEAWEGYRQRRHRSTHLQAIETA LLQQRNDRT-EDEDIVLWKGKNDVYKPQFLTKETLNHMRTISMDVDWYKGVWFGHSTPKY SFCVWLAVLNRLSTGDRMTHWNGGQSAACVLCHNAPETRDHLF---FSC-DF ASIVWSN--LARGIYGDR---FSTHWQDLIQA ISGSWM-TPLDSFFARYLFQATVHTIWRERNGRNHGEKP-NSAA LLIK

--- >gi|116830551|gb|ABK28233.1|	  103 residues, 50 /line  unknown [Arabidopsis thaliana]

-MLKWNKNVGTSCLLCNYPLETREHLF---FQC-PY SRTVWSE--LAGRLLASK---YTDNWLDIMKE LVSKDL-DATTRIVLRYVFQNTIHSIWRERNERRH- --GETRHRGRRRG---

--- >gi|15229111|ref|NP_190497.1|	  176 residues, 50 /line  unknown protein [Arabidopsis thaliana] -MDVE--- EDAEVSGTSKDVPQGGSEEWGHN- -FLLETWLQIRSTRPEMQDYKAIWFSDATPK- ---ERMLKWNKNVGTSCLLCNYPLETREHLF---FQC-PY SRTVWSE--LAGRLLASK---YTDNWLDIMKE LVSKDL-DATTRIVLRTEKIIRLIDKNIRNR- -LSTLRVRGEEKYP--RGIQVW-- F--ASRQD QNQG--- >gi|15217619|ref|NP_174632.1|	  210 residues, 50 /line  unknown protein [Arabidopsis thaliana]

MGSFSIDLPTLSGELDVYD- --WVVEDKLCNGFSSAKTWAALRPRSDVVSWAKTVWFKGATPKH AFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLF---LTC-EF ACFLWHT--VSVRLELPA---FS---FVVWNDLMDW TLQRN--RRSPPTLRKLIVQSVLYAIWKQRNNFLHNHET-ILPS VVFKTIDREIKNSITARRLK--KRFR--RLMTLW-- L--H --- >gi|15222880|ref|NP_175429.1|	  91 residues, 50 /line  unknown protein [Arabidopsis thaliana]

--MQKTERVIAISQTEESDFNCV---LLC-MF A--- ---SFIRKLAAQSTIYNLWKQRNNVVHNQVS-IPAP TIFKLIDREIRNIITARRKR--KRYR--NLMQIW-- L--T --- >gi|79325061|ref|NP_001031615.1|	  146 residues, 50 /line  unknown protein [Arabidopsis thaliana]

---MWISNLDRLPTRARLVSWGLQISPLCCLCSQSVETRDHLI---LTC-GF SSSIWNM--VQARLRLQP---VQ---FRVWESLLSW IKLST--ASSPSIIRKLVAQATVCAIWKQRNNLLHNLQD-ILPS IIFKNIDREIINSINARCHR--RKFR--SLMRLW-- I--R --- >gi|15236296|ref|NP_193083.1|	  256 residues, 50 /line  unknown protein [Arabidopsis thaliana] --MMMEVLVARGGCDHGDGNDVVVVMVVMVAVVVVVTARWWLWLWLRLASYDGCDDGDGG CGGTSFWYDNWCSLGSLYEVLGARGCIDMGISSSWSVADVLRSHVRRRHRTATLNSIEDE IDALR-QRHDPTCDIPLWKCCNGSFKHKF--- ---F SRDTWYEIPLTRDMLGSR---YTTRWDSLVDL STSSAL-TQIHMFVFRYVFQLTTHSLWKERNGRRHGESP-IPAP SLAKMIDKNMRNRLSTLATSGSPIYK--SGLRYW-- F--STHCR --- >gi|22328367|ref|NP_680602.1|	  219 residues, 50 /line  unknown protein [Arabidopsis thaliana] ---MDL-- -KEKNRRIQ--- --IHGTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKY SFCSWLAAHGRLPTGDRMINWANGTATDCIFCQGTLETRDHLF---FTC-SF TSAIWVD--LARGIFKTQ---YTSHWQSIIEA ITNSQH-HRVEWFLRRYVFQATIYIVWRERNGRRHGEPP-NTAS QLVGWIDKQIRNQLSSICFKGDKRYD--GSLQVW-- F--QSR-S --- >gi|9759131|dbj|BAB09616.1|	  184 residues, 50 /line  unnamed protein product [Arabidopsis thaliana]

-MVNINSGSWIWKSICKLRPMAREFVVCKVGSG-ITC-NF WSENWTN--LGPLIHLTGDLGPRVSGLPRNASVADALRDGVWWINGSRSRNPIIQL LKNCLPLSSVVNLQVDA-EDDLFMWKVGGTHQATVYTLWRERNTRLHTSSS-RPAA GLIMEIKNLIRTHLDPLSRAQRIGPNGLSYLATW-- F--GLF-I --- >gi|15226569|ref|NP_179162.1|	  90 residues, 50 /line  unknown protein [Arabidopsis thaliana]

-MKE LAGKNL-GVTTRFVLRYVFQNTIHSIWRERNERRHGEKP-SRTE KIVKLIDKNIRNRLSTIRVRGEEKYA--QGTQMR-- F--ASRQY QIDRTFL >gi|22327496|ref|NP_680373.1|	  245 residues, 50 /line  unknown protein [Arabidopsis thaliana]

MAIPLERKLCKVMNRTRSSHHRRDFLNQVEEE LRKKRQHRLETEPDAALWKGKNDCYRKQFSSRETWSQIRLPKAERNGHKVIWFSGATPRY TFISWLVMKNRVATGERMVNWKLNVDTSCVFCKHPLETREHLF---FQC-PF SKEVWEK--LVRGILLHK---FSDKWLEVMKE ITSKSH-DNTKRFILKFVFENAIHFIWTERNDRRHGERP-STTE KMVKLIDKNVRNRLSTLKQGKVEKHV--EGLQVW-- F--ASR-- --- >gi|15226571|ref|NP_179163.1|	  185 residues, 50 /line  unknown protein [Arabidopsis thaliana] ---MSNQNKPQPP-KPLMKQQSLPPDINREE-

---AWLRMKKKHPSA--RLHRSKSCVTNDDIEELRGCFDLGFGFEPDSLDFNP-SL SKTIPALD-LYSAIHRQYSNHLSRTWSSTSER DVNSSTTT-IVNKVMS---EEWHFCN--IIVKRLFQLMFLYLTVSQVRRRHGEAP-YSAV RLIDGIDKQIRNRFATIRVTGDQC

--- >gi|4538991|emb|CAB39612.1|	  186 residues, 50 /line  hypothetical protein [Arabidopsis thaliana] QSQTRDNRLVQFSQFNKPIEPLRIESEYRTLIEMTKKEE-

---EHVVESLNLPDVAGKPSTKVGPMGS REDVSGMG-DRGVTVVSEPDPDKCGVKK ALTVGVTVMVRNEDVGIYNDKITFREMIVGIIYAFQRGVYNIRRERNCRKNRETP-KPQL QLLQNLDKHVGNRIFSIREQGYRRFD--RCMETW-- F--ASK-- --- >gi|7487943|pir||T01450	  80 residues, 50 /line  limonene cyclase homolog F24O1.12 - Arabidopsis thaliana ---MLNKNPK--

---RKQFDLGPKICDECFIHSIWNERNQRRHGKSP-SLPE RLIKMIDKNVRNRLSTMSGCGVLKYK--DEMRVW-- F--ASRA- ---