At2g10836.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g10836-1fgu_A.pir.txt

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Assigned types to 282 residues in Sequence 2-10836, 37 remain unknown Assigned types to 213 residues in Sequence 1fgu_A, 106 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 64 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 65 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 66 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 67 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 68 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 69 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 70 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 71 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 72 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 73 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 74 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 75 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 76 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 77 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 156 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 157 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 158 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 159 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 160 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 161 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 162 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 163 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 164 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 165 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 166 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 167 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 168 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 169 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 170 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 171 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 172 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 173 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 174 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 175 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 176 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 177 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 178 All residues are positively and negatively charged

Translated sequence file At2g10836-1fgu_A.pir.txt into sequence alignment.

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>1FGU.pdb Made from 3793 ATOM records in 1FGU.pdb MSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDES GEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTF NNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDAT KITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKG ARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSMSKV VPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIR ATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNET SVMPCVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVA KRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLS VLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVS

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Best alignment: 1FGU.pdb    2  SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG    51 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG 1fgu_A      1  SKVVPIASLTPYQSKWTICARVXXXXXXXXXXXXXXEGKLFSLELVDESG    50

1FGU.pdb   52  EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN   101 EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 1fgu_A     51  EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN   100

1FGU.pdb  102  NETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK   151 NETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 1fgu_A    101  NETSVMPCEDXXXXXXXXXXXXXXXXXXXXXXXSLVDIIGICKSYEDATK   150

1FGU.pdb  152  ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGA   201 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGA 1fgu_A    151  ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGA   200

1FGU.pdb  202  RVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSMS   248 RVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVS+S 1fgu_A    201  RVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSIS   247

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Highlighted IDENTICAL residue ILE 187  index1    7  path   47  %Seq 100.00 Highlighted IDENTICAL residue LEU 190  index1   10  path   50  %Seq 100.00 Highlighted IDENTICAL residue SER 195  index1   15  path   55  %Seq 100.00 Highlighted IDENTICAL residue GLU 225  index1   45  path   85  %Seq 100.00 Highlighted IDENTICAL residue VAL 227  index1   47  path   87  %Seq 100.00 Highlighted IDENTICAL residue GLY 231  index1   51  path   91  %Seq 100.00 Highlighted IDENTICAL residue ILE 233  index1   53  path   94  %Seq 100.00 Highlighted IDENTICAL residue ALA 235  index1   55  path   96  %Seq 100.00 Highlighted IDENTICAL residue LEU 262  index1   82  path  124  %Seq 100.00 Highlighted IDENTICAL residue ASN 274  index1   94  path  138  %Seq 100.00 Highlighted IDENTICAL residue PHE 280  index1  100  path  144  %Seq 100.00 Highlighted IDENTICAL residue THR 284  index1  104  path  148  %Seq 100.00 Highlighted IDENTICAL residue PRO 288  index1  108  path  152  %Seq 100.00 Highlighted IDENTICAL residue GLY 321  index1  141  path  185  %Seq 100.00 Highlighted IDENTICAL residue GLU 327  index1  147  path  191  %Seq 100.00 Highlighted IDENTICAL residue THR 330  index1  150  path  194  %Seq 100.00 Highlighted IDENTICAL residue VAL 334  index1  154  path  202  %Seq 100.00 Highlighted IDENTICAL residue ASN 337  index1  157  path  205  %Seq 100.00 Highlighted IDENTICAL residue THR 351  index1  171  path  219  %Seq 100.00 Highlighted IDENTICAL residue GLY 353  index1  173  path  221  %Seq 100.00 Highlighted IDENTICAL residue LYS 354  index1  174  path  222  %Seq 100.00 Highlighted IDENTICAL residue GLY 362  index1  182  path  230  %Seq 100.00 Highlighted IDENTICAL residue PHE 368  index1  188  path  236  %Seq 100.00 Highlighted IDENTICAL residue VAL 383  index1  203  path  267  %Seq 100.00 Highlighted IDENTICAL residue ASP 385  index1  205  path  269  %Seq 100.00 Highlighted IDENTICAL residue GLY 388  index1  208  path  272  %Seq 100.00 Highlighted IDENTICAL residue ARG 389  index1  209  path  273  %Seq 100.00 Highlighted IDENTICAL residue SER 392  index1  212  path  278  %Seq 100.00 Highlighted IDENTICAL residue SER 397  index1  217  path  283  %Seq 100.00 Highlighted IDENTICAL residue ILE 399  index1  219  path  285  %Seq 100.00 Highlighted IDENTICAL residue ASN 402  index1  222  path  288  %Seq 100.00 Highlighted IDENTICAL residue PRO 406  index1  226  path  292  %Seq 100.00 Highlighted IDENTICAL residue GLU 407  index1  227  path  293  %Seq 100.00 Highlighted IDENTICAL residue ARG 412  index1  232  path  298  %Seq 100.00 Highlighted IDENTICAL residue PHE 415  index1  235  path  303  %Seq 100.00 Highlighted IDENTICAL residue GLN 420  index1  240  path  308  %Seq 100.00 Highlighted 36 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g10836-1fgu_A.pir.txt.1FGU.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g10836-1fgu_A.pir.txt PIR amino_acid 1FGU.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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