At2g13150.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g13150-2fxm_A.pir.txt

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Assigned types to 262 residues in Sequence 2-13150, 0 remain unknown Assigned types to 123 residues in Sequence 2fxm_A, 139 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g13150-2fxm_A.pir.txt into sequence alignment.

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>2FXM.pdb Made from 1953 ATOM records in 2FXM.pdb PLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDL QLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELT AKKRKLEDECSELKRDIDDLELTLAKASMKEEFTRLKEALEKSEARRKEL EEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN ERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL

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Best alignment: 2FXM.pdb    3  LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL    52 + + + KE+AS  +E  R+   L+  E+  +  ++K+  ++    +L+L 2-13150   137  IAKSTKLKEVASDPKEVRRI---LKNQESAARSKQKKLQYMINLEL   179

2FXM.pdb   53  QVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAEL-TA   101 ++  ++  A   E+   L  +K     + KE+  R+E  E+ +AEL  A 2-13150    180  KINFLENKNASIFEKIKLLENDKTMRMNEKKEIMIRIESLEQ-HAELRDA   228

2FXM.pdb  102  KKRKLEDECSELK   114 L E   LK 2-13150    229  LTEHLHVEIERLK   241

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Highlighted IDENTICAL residue LEU 840  index1    3  path  137  %Seq  50.00 Highlighted IDENTICAL residue LYS 847  index1   10  path  144  %Seq 100.00 Highlighted IDENTICAL residue GLU 848  index1   11  path  145  %Seq 100.00 Highlighted IDENTICAL residue ALA 850  index1   13  path  147  %Seq 100.00 Highlighted IDENTICAL residue SER 851  index1   14  path  148  %Seq 100.00 Highlighted IDENTICAL residue GLU 855  index1   18  path  152  %Seq 100.00 Highlighted IDENTICAL residue ARG 858  index1   21  path  155  %Seq 100.00 Highlighted IDENTICAL residue GLU 867  index1   30  path  161  %Seq 100.00 Highlighted IDENTICAL residue LEU 880  index1   43  path  174  %Seq 100.00 Highlighted IDENTICAL residue LEU 887  index1   50  path  177  %Seq 100.00 Highlighted IDENTICAL residue GLN 892  index1   55  path  182  %Seq 100.00 Highlighted IDENTICAL residue GLU 894  index1   57  path  184  %Seq 100.00 Highlighted IDENTICAL residue ILE 909  index1   72  path  199  %Seq 100.00 Highlighted IDENTICAL residue VAL 919  index1   82  path  209  %Seq 100.00 Highlighted IDENTICAL residue GLU 935  index1   98  path  224  %Seq 100.00 Highlighted IDENTICAL residue LEU 943  index1  106  path  233  %Seq 100.00 Highlighted IDENTICAL residue LEU 950  index1  113  path  240  %Seq 100.00 Highlighted 17 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g13150-2fxm_A.pir.txt.2FXM.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g13150-2fxm_A.pir.txt PIR amino_acid 2FXM.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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