At2g01590.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g01590_1b91A.pir.txt

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Assigned types to 174 residues in Sequence 2-01590, 31 remain unknown Assigned types to 85 residues in Sequence 1b91A, 120 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 70 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 71 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 72 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 73 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 74 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 75 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 76 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 77 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 78 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 79 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 80 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 81 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 82 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 83 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 84 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 85 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 86 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 87 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 88 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 89 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 90 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 107 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 124 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 125 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 126 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 127 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 130 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 131 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 132 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 133 All residues are positively and negatively charged

Error in function WYRM_analyze_conservation_in_sequence_alignment Path index 134 All residues are positively and negatively charged

Translated sequence file At2g01590_1b91A.pir.txt into sequence alignment.

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>1N72.pdb Made from 1937 ATOM records in 1N72.pdb MSKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFP MDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILE KFFFSKIKEAGLIDK

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Best alignment: 1N72.pdb    6  RDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKT    55 + P +L   K +  Q +  +   P +  ++R    G Y      MD+ T 2-01590     45  KKPLKLRQVSKQMGSQNQQRRGNKPSIAQIERAFGSGSYRDSEGEMDMNT    94

1N72.pdb   56  MSERL    60 + + L 2-01590    95  VFDEL    99

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Highlighted IDENTICAL residue PRO 725  index1    8  path   47  %Seq 100.00 Highlighted IDENTICAL residue LEU 728  index1   11  path   50  %Seq 100.00 Highlighted IDENTICAL residue LYS 733  index1   16  path   55  %Seq 100.00 Highlighted IDENTICAL residue GLN 738  index1   21  path   60  %Seq 100.00 Highlighted IDENTICAL residue PRO 747  index1   30  path   69  %Seq 100.00 Highlighted IDENTICAL residue TYR 761  index1   44  path  104  %Seq 100.00 Highlighted IDENTICAL residue ASP 769  index1   52  path  113  %Seq 100.00 Highlighted IDENTICAL residue MET 773  index1   56  path  117  %Seq 100.00 Highlighted IDENTICAL residue SER 774  index1   57  path  118  %Seq 100.00 Highlighted 9 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g01590_1b91A.pir.txt.1N72.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g01590_1b91A.pir.txt PIR amino_acid 1N72.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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