At2g06040.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g06040-c1fzta_.pir.txt

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Assigned types to 461 residues in Sequence 2-06040, 14 remain unknown Assigned types to 211 residues in Sequence c1fzta_, 264 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g06040-c1fzta_.pir.txt into sequence alignment.

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>1FZT.pdb Made from 3382 ATOM records in 1FZT.pdb MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLK SRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQ GLNKDDARKKWGAEQVQIWRRSYDIAPPNGESLKDTAERVLPYYKSTIVP HILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKD GKYVSKELIDN

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Best alignment: 1FZT.pdb   36  ETGIKEAKLG---GERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPN    82 +G + AK G  G  ++S  + FD+    +  + ++ C  ++EE    N 2-06040     89  RSGKRVAKRGVDYGIEIESSKFDFDLKLGESASKTKRVCVDLVEETIVKN   138

1FZT.pdb   83  LETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQ   117 E+ S  L ++      G+  D   +KW   +V+ 2-06040   138  -ESEDSVDLEDK---SSSGVLGDSLAEKWYVVEVE   169

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Highlighted IDENTICAL residue GLU  36  index1   36  path   89  %Seq  50.00 Highlighted IDENTICAL residue THR  37  index1   37  path   90  %Seq  50.00 Highlighted IDENTICAL residue GLY  38  index1   38  path   91  %Seq  50.00 Highlighted IDENTICAL residue ILE  39  index1   39  path   92  %Seq  50.00 Highlighted IDENTICAL residue LYS  40  index1   40  path   93  %Seq  50.00 Highlighted IDENTICAL residue GLU  41  index1   41  path   94  %Seq  50.00 Highlighted IDENTICAL residue ALA  42  index1   42  path   95  %Seq  50.00 Highlighted IDENTICAL residue LYS  43  index1   43  path   96  %Seq  50.00 Highlighted IDENTICAL residue LEU  44  index1   44  path   97  %Seq  50.00 Highlighted IDENTICAL residue GLY  45  index1   45  path   98  %Seq  50.00 Highlighted IDENTICAL residue GLY  46  index1   46  path  102  %Seq  50.00 Highlighted IDENTICAL residue GLU  47  index1   47  path  103  %Seq  50.00 Highlighted IDENTICAL residue ARG  48  index1   48  path  104  %Seq  50.00 Highlighted IDENTICAL residue LEU  49  index1   49  path  105  %Seq  50.00 Highlighted IDENTICAL residue LYS  50  index1   50  path  106  %Seq  50.00 Highlighted IDENTICAL residue SER  51  index1   51  path  107  %Seq  50.00 Highlighted IDENTICAL residue ARG  52  index1   52  path  108  %Seq  50.00 Highlighted IDENTICAL residue GLY  53  index1   53  path  109  %Seq  50.00 Highlighted IDENTICAL residue TYR  54  index1   54  path  110  %Seq  50.00 Highlighted IDENTICAL residue LYS  55  index1   55  path  111  %Seq  50.00 Highlighted IDENTICAL residue PHE  56  index1   56  path  112  %Seq  50.00 Highlighted IDENTICAL residue ASP  57  index1   57  path  113  %Seq  50.00 Highlighted IDENTICAL residue ILE  58  index1   58  path  114  %Seq  50.00 Highlighted IDENTICAL residue ALA  59  index1   59  path  115  %Seq  50.00 Highlighted IDENTICAL residue PHE  60  index1   60  path  116  %Seq  50.00 Highlighted IDENTICAL residue THR  61  index1   61  path  117  %Seq  50.00 Highlighted IDENTICAL residue SER  62  index1   62  path  118  %Seq  50.00 Highlighted IDENTICAL residue ALA  63  index1   63  path  119  %Seq  50.00 Highlighted IDENTICAL residue LEU  64  index1   64  path  120  %Seq  50.00 Highlighted IDENTICAL residue GLN  65  index1   65  path  121  %Seq  50.00 Highlighted IDENTICAL residue ARG  66  index1   66  path  122  %Seq  50.00 Highlighted IDENTICAL residue ALA  67  index1   67  path  123  %Seq  50.00 Highlighted IDENTICAL residue GLN  68  index1   68  path  124  %Seq  50.00 Highlighted IDENTICAL residue LYS  69  index1   69  path  125  %Seq  50.00 Highlighted IDENTICAL residue THR  70  index1   70  path  126  %Seq  50.00 Highlighted IDENTICAL residue CYS  71  index1   71  path  127  %Seq  50.00 Highlighted IDENTICAL residue GLN  72  index1   72  path  128  %Seq  50.00 Highlighted IDENTICAL residue ILE  73  index1   73  path  129  %Seq  50.00 Highlighted IDENTICAL residue ILE  74  index1   74  path  130  %Seq  50.00 Highlighted IDENTICAL residue LEU  75  index1   75  path  131  %Seq  50.00 Highlighted IDENTICAL residue GLU  76  index1   76  path  132  %Seq  50.00 Highlighted IDENTICAL residue GLU  77  index1   77  path  133  %Seq  50.00 Highlighted IDENTICAL residue VAL  78  index1   78  path  134  %Seq  50.00 Highlighted IDENTICAL residue GLY  79  index1   79  path  135  %Seq  50.00 Highlighted IDENTICAL residue GLU  80  index1   80  path  136  %Seq  50.00 Highlighted IDENTICAL residue PRO  81  index1   81  path  137  %Seq  50.00 Highlighted IDENTICAL residue ASN  82  index1   82  path  138  %Seq  50.00 Highlighted IDENTICAL residue GLU  84  index1   84  path  139  %Seq  50.00 Highlighted IDENTICAL residue THR  85  index1   85  path  140  %Seq  50.00 Highlighted IDENTICAL residue ILE  86  index1   86  path  141  %Seq  50.00 Highlighted IDENTICAL residue LYS  87  index1   87  path  142  %Seq  50.00 Highlighted IDENTICAL residue SER  88  index1   88  path  143  %Seq  50.00 Highlighted IDENTICAL residue GLU  89  index1   89  path  144  %Seq  50.00 Highlighted IDENTICAL residue LYS  90  index1   90  path  145  %Seq  50.00 Highlighted IDENTICAL residue LEU  91  index1   91  path  146  %Seq  50.00 Highlighted IDENTICAL residue ASN  92  index1   92  path  147  %Seq  50.00 Highlighted IDENTICAL residue GLU  93  index1   93  path  148  %Seq  50.00 Highlighted IDENTICAL residue ARG  94  index1   94  path  149  %Seq  50.00 Highlighted IDENTICAL residue ASP  98  index1   98  path  150  %Seq  50.00 Highlighted IDENTICAL residue LEU  99  index1   99  path  151  %Seq  50.00 Highlighted IDENTICAL residue GLN 100  index1  100  path  152  %Seq  50.00 Highlighted IDENTICAL residue GLY 101  index1  101  path  153  %Seq  50.00 Highlighted IDENTICAL residue LEU 102  index1  102  path  154  %Seq  50.00 Highlighted IDENTICAL residue ASN 103  index1  103  path  155  %Seq  50.00 Highlighted IDENTICAL residue LYS 104  index1  104  path  156  %Seq  50.00 Highlighted IDENTICAL residue ASP 105  index1  105  path  157  %Seq  50.00 Highlighted IDENTICAL residue ASP 106  index1  106  path  158  %Seq  50.00 Highlighted IDENTICAL residue ALA 107  index1  107  path  159  %Seq  50.00 Highlighted IDENTICAL residue ARG 108  index1  108  path  160  %Seq  50.00 Highlighted IDENTICAL residue LYS 109  index1  109  path  161  %Seq  50.00 Highlighted IDENTICAL residue LYS 110  index1  110  path  162  %Seq  50.00 Highlighted IDENTICAL residue TRP 111  index1  111  path  163  %Seq  50.00 Highlighted IDENTICAL residue GLY 112  index1  112  path  164  %Seq  50.00 Highlighted IDENTICAL residue ALA 113  index1  113  path  165  %Seq  50.00 Highlighted IDENTICAL residue GLU 114  index1  114  path  166  %Seq  50.00 Highlighted IDENTICAL residue GLN 115  index1  115  path  167  %Seq  50.00 Highlighted IDENTICAL residue VAL 116  index1  116  path  168  %Seq  50.00 Highlighted IDENTICAL residue GLN 117  index1  117  path  169  %Seq  50.00 Highlighted 78 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g06040-c1fzta_.pir.txt.1FZT.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g06040-c1fzta_.pir.txt PIR amino_acid 1FZT.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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