At2g04270.4/MSA

>gi|22325461|ref|NP_178508.2|	  713 residues, 50 /line  glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana] --MQTDSEQDVESCDDNENNLNTDEQNHQLTET---

LLPDGGFF-QSE S---IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGG AFVNIGSARHSFMDIKSNREPFIFPPFCDGSK---KQAADGSPILSMNDIPAPHEIEHAS YDFEASSLLDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVN-GTVVNHGAVEVGSENG HIPMERGHSADSLDS--NASVAKASK--VM-SS---KDNKWIQVRKGTKIIVQVVKEGLG TKGPTLTAYPKLRSRFWVLLTRCK-RIGVSKKISGVE-RTRLKVIAKTL--QPQGF--GL TVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLS VVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEG ILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIR LRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPS VTFMISEPCSCCHATGRVEALETTFSKIEQ--EICR --QLAKMEKRGD-LEN PKSW--PRFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKPF--

---MDEKT ---VNERQHQ-- --VAISL- --LKKADAIADSSGKKKLTLIPIKKEKTSGKQR---

---R >gi|117927963|ref|YP_872514.1|	  702 residues, 50 /line  ribonuclease, Rne/Rng family [Acidothermus cellulolyticus 11B] MPENEPNESVAKTDAPRRIRRSRRTAGSDTAAVESTSASPSRAPDAATLNDATPAGESGT GAPVAELPPVKRPAVPPPMVVFQPPPPVVFQAPEPAAVTSRRRRARRVPEEPSAALSSTD GAAGEPEIRSADLDDGSAPSEPAEQVSAATTEGITARRRRRRRRRTTGTAEDDRVLDAVE APETDTGSAGADDLDAAMALLTGSTRIEAKKQRRREGRELLRRNRRGMILTEAEFLARRE S---VERVMVVRQR-GDLTQIGVLEDGILVEHYVSTTSANRIVGNVYLGRVQNVLPGMEA AFVDIGKGRNAVLYAGEVNFDL--

--TGLE-GQ---PQRIEAALKPGQTVVVQVTKDPIG HKGARLTSQISLPGRFLVFVPEGS-MMGISRKLPD-TERNRLKAIL-RKI-MPEGA--GV IVRTAAEGASEEELARDIARLMAQWEDIQKKAESG--TAPALLYAEPDLTIR VVRDIFNEDFAQLVVQGDSEWDMVEAYVAHVAPDLLPRISHWTSDEDVFAHYRIDEQLAK ALDRRVWLPSGGYLIIDRTEAMVVIDVNTGRFV-GKGGNLEETVTKTNLEAAEEIVRQLR LRDIGGIIVIDFIDMLLESNRELVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGSG LLEAFSEPCEVCGGRGVIIHTDPVTAQR -RAH RGRARTRQEAEPSAEPVAEPAAVGAAGAER--

---RGRRS ---ARAAS

>gi|119355890|ref|YP_910534.1|	  565 residues, 50 /line  ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides DSM 266]

-MKK S---LNKQLLMNKT-GDEIQVALVEEGRLAELIIERPESRRSIGDIYLGRVHKVVEGLKA AFVDIGQKSDGFLHFSDVGTT--T EDYRALIEDDDDDDTTGTDESDGDEI---AAVL-S-QP--AVL--PEQ NG-KSSARSGAKRLTAP--AQDGEDGGRRQ-SY---TQMIAGKLKPNDSILVQVIKEPIS TKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVIARKERSRLKKL-VRSM-LPDGF--GA IIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLQDA--VPPQLIFKEDTIISS VLRDSLNADVTEIVANSPVIYKETLNYIQWAAPEMEKNVTLYQGKLPLFEGYSIAKDVES IFSRKVWLKSGGYIIIEHTEAMVVIDVNSGRY--AAKREQEENSLKTNLEAAREIVRQLR LRDIGGIIVVDFIDMLDQKNAKKVYDSMRTELRNDRAKSNILPMSDFGIMQITRERIRPS LMQRMGDQCPACGGTGVVQARFTTINQIER--WLRK -YAL QNTMKLQQLDLYVSPTVAEPLQQSEMNTELKWFLQHLLFVRVKPDESLRSDDFRFYSR--

---KNNKE ---ITAEYGD--

---L >gi|67939525|ref|ZP_00532023.1|	  572 residues, 50 /line  Ribonuclease E and G [Chlorobium phaeobacteroides BS1]

-MKK T---VKKQLLMNKS-GDEIQVALVEEGRLAELVIERPDSLRSIGDIYLGRVHKVVEGLKA AFVDIGQKSDGFLHFSDVGTT--T EDYRALIEDDDDDDENGNGDADADEE---GKAGMK-TQQEQKEDTRR--PSP AG-NGQKNGGSRSKGNG--ASAGKDGDGRQ-SY---TQMIAGKLKTNDSILVQVIKEPIS NKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERARLKKL-VRSM-LPDGF--GA IIRTVAELQEEELLKKDLEKLLVKWEQIEEKLKDA--KPPQLIFKEDTIISS VLRDSLTTDVTELVANSQSIHKETLNYIQWAAPEMEKNVFFYQGKLPLFEGYGIAKDVES IFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRY--AAKKEQEENSLKTNLEASREVVRQLR LRDIGGIIVVDFIDMLDPKNSKKVYDSMKNELRQDRAKSNILPMSDFGLMQITRERIRPS LMQRMGDQCPACGGSGIVQARCTTINQIER--WLRK -YAL QKKMVFQQLDLYVSPTVAEPLRDTDRNIEMKWFLQHLLFVRVKQDESLRSDDFRFYAR--

---KNSAD ---LTAEYGD--

---L >gi|145218838|ref|YP_001129547.1|	  564 residues, 50 /line  ribonuclease, Rne/Rng family [Prosthecochloris vibrioformis DSM 265]

-MKK S---VKKQLLMNKT-GDEIQVALVEEGRLAELIIERPESRRSIGDIYLGRVHKVIEGLKA AFVDIGQKSDGFLHFSDVGTT--T EDYKALIEDDDDDDDGVEGDEEGDAK---GSSAVQ--AEP SGAKTVARSGGRGPSASGKDSRSEQAEKRQ-SY---TQMIAGKLKANDSILVQVIKEPIS TKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKL-VRSM-LPEGF--GA IIRTVAEMQEESLLRQDLEMLLGKWTQIEEKLKDA--TPPQLIFKEDTIISS VLRDSLNSDVTEIVANSPSIHKETLNYIEWAAPDMVKNVSLYQGKLPLFEGYGIAKDVES IFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRY--AAKREQEENSLKTNLEAAREVVRQLR LRDIGGIIVVDFIDMMDSRNSKKVYDTMKGELRNDRAKSNILPLSDFGVMQITRERIRPS LMQRMGDQCPACGGSGVVQARFTTINQIER--WLRK -YAL QQSMKFQQLDLYVSPTVIEPLQNSDMKTEMKWFLQHLLFVRVKEDESLRSDDFRFYSR--

---KNSKD ---ITAEYGD--

---L >gi|67918586|ref|ZP_00512182.1|	  566 residues, 50 /line  Ribonuclease E and G [Chlorobium limicola DSM 245]

-MKK S---MNKQLLMNKI-GDEIQVALVEEGRLAELTIERPESRRSIGDIYLGRVHKVVEGLKA AFVDIGQKSDGFLHFSDVGTT--N EDYRALIEDDDDDESVSSDDGDGDAV---EVAA-TAGGGDPPA--AGP HA-RGPQRNGGRKGPVTEEEKAEKRQ-SY---TQMIAGKLKPNDSILVQVIKEPIS SKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVVRKERARLKKL-VRSM-LPEGF--GA IIRTVAEQQEESLLKQDLEKLLTKWVQIEEKLKDA--SPPQLIFKEDTIISS VLRDSLTSDVTEIVANSPVIYKETLNYIQWAAPEMEKNVSLYQGKLPLFEGYSIAKDVES IFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRY--AAKREQEENSLKTNLEAAREIVRQLR LRDIGGIIVVDFIDMLDPKNAKKVHDAMKTELRNDRAKSNILPMSDFGIMQITRERIRPS LMQRMGDQCPACGGTGVVQARFTTINQIER--WLRK -YAL QQSMKFQQLDLYVSPTVAEPLRNTEMKTELKWFLQHMVFVRVKQDESLRSDDFRFYNR--

---KNNKD ---ITAEYGE--

---L >gi|78185904|ref|YP_373947.1|	  570 residues, 50 /line  Ribonuclease E and G [Pelodictyon luteolum DSM 273]

-MKK S---VKKQLLMNKT-GDEIQVALVEDGRLAELIIERPESRRSIGDIYLGRVHKVIEGLKA AFVDIGQKSDGFLHFSDVGTT--T EDYRALIEDDDDDDETAADETGTAED---GADEEE-APVAAGAPQE-Q QGSRQSSRSGGRKPQP--QQRKEDGAEKRQ-SY---TQLIAGKLKANDSILVQVIKEPIS TKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKL-VRSM-LPEGF--GA IIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLKDA--APPQLIFKEDTIISS VLRDSLTSDVTEIVANSPSIHKETLNYIEWAAPEMVKNVSLYQGKLPLFEGYGIAKDVES IFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRY--AAKREQEENSLRTNMEAAREVVRQLR LRDIGGIIVVDFIDMMDARNSKKVYDSMKGELRNDRAKSNILPMSDFGIMQITRERIRPS LMQRMGDQCPACGGSGVVQARFTTINQIER--WLRK -YAL QHAMKFQQLDLYVSPTVAEPLKNSDMNTELKWFLQHMLFVRVKQDESLRSDDFRFYTR--

---KDSRD ---ITAEYGD--

---L >gi|78189942|ref|YP_380280.1|	  568 residues, 50 /line  Ribonuclease E and G [Chlorobium chlorochromatii CaD3]

-MKK S---STKQLLMNKT-GDEIQVALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKA AFVDIGQKSDGFLHFSDVGTT--N EDYRALIEDDDDDDAIIGDDIESDEAT--GQNDSE-FDEASDGETTV- SAPKTVARSNSKKPS-SGEQSGEKPQ-TY---TQMIAGKLKPNDSILVQVIKEPIS SKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERSRLKKL-VRSI-LPEGF--GA IIRTVAEDQEEALLKQDLEKLLTKWKQIEEKLQDA--TPPQLIFKEDTIISS VLRDSLTSDVSEIVANSPAIYKETLNYIEWAAPEMVKNVALYQGKLPLFEGYAIAKDVES IFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRY--AAKREQEENSLKTNLEAAREVVRQLR LRDIGGIIVVDFIDMLDPKNAKKIYDAVKTELRNDRAKSNILPMSDFGLMQITRERIRPS LMQRMGDQCPACGGTGIVQARFTTINQIER--WLRK -YAL QHPLRFQQLDLYVSPTVLEPLQNSDMKTEMKWFLQHMLFVTVKGDESLRSDDFRFYNR--

---KNNKD ---ITAEYGE--

---L >gi|146296322|ref|YP_001180093.1|	  571 residues, 50 /line  ribonuclease, Rne/Rng family [Caldicellulosiruptor saccharolyticus DSM 8903]

MQSEIIVDV-SFGETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDA AFVNIGQDKNAFLYLGDINRLE-FGDTDE---

-Y-YE---IKTNPLALRCGQEIVVQVIKEAYD QKGPRVTTNITLPGRYLVLLPNTD-YIGISKRIEFEEERTRLKEIACKI--KPDGM--GL IVRTAAEGKSEEVLRNELEFLRNLWQKIRQKSKES---APVLLYKDYDLVFK AVRDMFTNQVDRFVINDRKKYNKIIEFLSTYAPSLKSKVEYFNLATNIFEYFQIEQKLSK ALSKRIWLKSGGYIVIDETEALTVIDVNTGKF--VGKNDVSETILKTNLEAAVEIARQIR LRDIGGIIIIDFIDMKNPEHQKLVLDALKEALKRDKTKTVVVGITPLGLVEMTRKKVRQR LSCIMQSCCPYCEGSGKILSPETVGLKVLK--EIEW -YFK NRVE--EKFFVEINTKVCEVLRKGEVDRIKELQEKYKKKVYLKASSNIHINKFTICPV--

---KDEDH ---YMALCGA-- --LSEGDEVLAFVEEEDKFNPKNAVGYVNQNRIEFDDASD LIGKYIYAKVEKVYGTMSKGKIL--EVCEENKEDVKE---

---F >gi|148652236|ref|YP_001279329.1|	  613 residues, 50 /line  ribonuclease, Rne/Rng family [Psychrobacter sp. PRwf-1]

MSEELLINVSPME-SRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQA AFVEIGQSRTAFLHVNDMRRIARPAPTADKAPEIRHNAKQEPTVLTSMPVDRCEHIAENV VTASDTMASVIAETEPAMEADPLSAKTEIEAGSLREKKSALADESDNLKNDLLDNALLEI DSPDMVGNAITKADT--KPAAVKERQIIEP-PR---HELIQYRLHEGQKILVQVTKDQLG TKGARLTTNISLPSRYLVYLPSSE-HIGISQRIDNEEERHRLKTELGALM-QTVNLTGGL IARTAAERVPVAKLEEDIYYLVQLWRTIQARKEASA--GSGQSAVLIYQELSLPLR SIRDLVHPDTEKVIVDHEGMYNEVRQFAKEFVPFIYPRILPYSGEQPLFDVHRVEEDLRD ALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSF--VGGRSLEDTVYKTNLEATHAIARQLR LRNLGGIIILDFIDMLEQQHKDDVLENLQYQLSQDYAKTKITQVSELGLVEMTRKRTRES LEQQLCEPCKTCEGKGFIKTAETVCFEIFR--EIMR -CAR TYNSP-KKFTVVAHASVIDLLLSSEADTVADLEYLLGRVITFEVENLYTQEQYDI-

---VL---

---D >gi|30678106|ref|NP_850989.1|	  619 residues, 50 /line  glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana] --MQTDSEQDVESCDDNENNLNTDEQNHQLTET---

LLPDGGFF-QSE S---IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGG AFVNIGSARHSFMDIKSNREPFIFPPFCDGSK---KQAADGSPILSMNDIPAPHEIEHAS YDFEASSLLDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVN-GTVVNHGAVEVGSENG HIPMERGHSADSLDS--NASVAKASK--VM-SS---KDNKWIQVRKGTKIIVQVVKEGLG TKGPTLTAYPKLRSRFWVLLTRCK-RIGVSKKISGVE-RTRLKVIAKTL--QPQGF--GL TVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLS VVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEG ILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIR LRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPS VTFMISEPCSCCHATGRVEALETTFSKIEQ--EICR --QLVSV- ---IISILFCY-FSFQP---

NEEHLE--

>gi|83814929|ref|YP_444634.1|	  596 residues, 50 /line  ribonuclease, Rne/Rng family subfamily [Salinibacter ruber DSM 13855]

MSKEIVFNV-GNEQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQA AFVDIGQEQDAFLHFSDLSDNL-- --PYLLDFLGLEAPTVEAIDV--- -PKGKK-DW---DKRPSDLLNRGQTILVQVTKEPIS NKGSRISTDISLAGRFLVLVPLQN-YVAVSRKITDDEERRRLES-LASSL-VPDGV--GV IVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDK-PSPPELVHEDVDMASS IVRDEFSEEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADR AFKDRVELPSGGYLFIEKTEAMHVVDVNSGRS--GKGKSQAENSLNVNLEAARVIARQIR LRDLGGIIVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPS ITTTFSSANGTPSDDGDDGADPEELRQAERKIQSLEKEVEKREREVKRLKAEDDTPDEEV TALRQKIQALEDKLEAARAQQTAENATPRPSSSDGSAASAEGDAAPDELVEDIEQWLVAH SDTH--RAVTLRVHPFVAAFLRRPVPTYTTRWFMEHLVRVHVEADTEVPPHTFQVT

-DESG---

---APLPES---

---P >gi|87306478|ref|ZP_01088625.1|	  588 residues, 50 /line  ribonuclease E [Blastopirellula marina DSM 3645]

MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQA AFVDFGVGKNGFLHISDVEPQY-FRQGGYDPAEQLDDDFGGSYGGATA ADF-SDDDEEEISDSSGDDEEDKPDANDD---GDGDS-DD DAPPKPPQSRGRGQR--RPQQRRQRPGMRP-RV---KPPIQEIFKRGDEVLVQVIKEGIG SKGPTLSTYISIPGRYLVLMPALG-RVGVSRKIEDDQVRRRLRSTLLELS-PPKGL--GF IVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNT--TGPCDIYEESDMIIR TIRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKDPLFHKYHLDEEIAR INQREVPLRRGGSIVIDQTEALVAIDVNSGNF--RYDGTAEEAAYQLNMMAAKEIARQLR LRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFGLIEMTRQRIRPS LKRSVFKDCPCCKGRGVVKSAESMAIEVVR--MLLA -AAH HDGA--SHVTIRVNDEVATYLNNKKRRELARIEEDTNIVVQIYGSESFYPEHLEVECV--

-DADG---

---RRLHFDDRPTGNAR---

---H >gi|114331691|ref|YP_747913.1|	  849 residues, 50 /line  ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91]

MKRMLFNAT-QPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEA AFVDYGAGRHGFLPYKEIAPTC-FDK--

---NTE-RSS---HRIGELLREGQELIVQVDKDERG NKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSA-EERAELREVI-NHLQVPDGM--SI IARTAGIGRNEEELQWDLNYLVQLWRAIEGAASSER--GVFLIYQESSLVIR AIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIET AYSRQVTLPSGGSIVIDHTEALVSIDVNSARA--IRGSDIENTALNTNLEAADEIARQLR LRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARVQIGKISRFGLLELSRQRLRPS LGEGNYIPCPRCHGTGHIRGTDSSALHILR--IIQE -EAM KEQTSMLQVQLPV--DVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPNYTINRLRH EDVKSTEL-PPSYGMVEKTTEEIT-LPSTSQELK--AIRP---KAAVTGIK-PEQP APVP-EEKPREQLS--FLDKFF-SLFR--P---ASSSR-V EPEQTAEESQARPLRSERGRNRRDRGRNKRTKNNIPGTTASETLQEAGNLPSLEQS --TGHPV--ESTSNDDHHHKASRQGQDQLQESGAESNLPDATTTGEGTT--PAGDSVSER KTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSEN--NEPVVPSADGKE DRELSFLPPTEPTQH-ITSIASVDDITAEQEVASAKVIEP--INTDAESNTGSQAASE-- SRQPIELPDLTQSGLVMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSEPLVQI ETRD >gi|30249428|ref|NP_841498.1|	  853 residues, 50 /line  Ribonuclease G and E [Nitrosomonas europaea ATCC 19718]

MKRMLFNAT-QPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEA AFVDYGAGRHGFLPYKEIAPTC-FDR--

---NTD-WSG---HRVADLLREGQELIVQVDKDERG NKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSA-EERAELREVI-NNLQVPEGM--SI IARTAGIGRNEEELQWDLNYLVQLWRAIEEAASNEK--GVFLIYQESSLVIR AIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIET AYSRQVTLPSGGSIVIDHTEALVSIDVNSARA--IRGSDIETTALNTNLEAADEIARQLR LRDLGGLVVVDFIDMEVTRNQREVESSLLKALRLDRARVQIGKISRFGLLELSRQRLRPS LGEGNYIPCPRCHGTGHIRGTDSSALHILR--IIQE -EAM KEQTSMLQVQLPV--DVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPNYTITRLRH EDIKSTEL-PPSYEMVEKTSEEVT-LPSISQETR--ATRP---KAAVTGIK-PEQP APVP-EEKPREQLS--FLDKFF-SLFR--P---AGSNR-T ETDQAAEESQTKPSRGERSRNRRDRGRSKRTKTSTQ-VTANGSLQEAGHSSLLDHP VVVEHPVTDRATDNDRQHRKNGRQNPPQKLE--VASDQLDVSTTPADTA--ATADSTSER KTEKRGRSRRRRGSLHRDREDQINLNTATGQDEVIPIGENET--VEPVVSSDDDSK DTENILLLPVEPVGD--TSSTPTNDIIENQVTASAEIIETETIHTRGEPDSEYQVTVEPH PHQTIELPDLAQSGLIMIETAPDKISETEEVPPAPSRRPRSRPRRSVEPAADNAEPLVQV ETRD >gi|67641114|ref|ZP_00439899.1|	  607 residues, 50 /line  COG1530: Ribonucleases G and E [Burkholderia mallei GB8 horse 4]

---MLFNAT-QQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEA CFVNYGEDRHGFLPFKEVARQY-FKE--

---GVD-MRS---ARIQDALREGQELIVQVEKEERG NKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG-DERQELRETM-AQLQIPDGM--SM IARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIR AIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIET AYSRTVPLPSGGAIVIDHTEALVAIDVNSARA--TKGADIEETATRTNLEAADEVARQLR LRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPA LSEGSHVTCPRCNGTGHIRDTESSALQVLR--IIQE -EAM KENTAAIHCQVPV--EVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH DDARLDDP-RASWKMAEEAARELEAETGYSKRAE--ETKPR-QEAAVKGIT-PERP APSPAPQRQSAPEAAAPV-AAAPASGGGFMKWLK-E---MAE---GPVWR-- -AAGCGA--RTGARRA ---GNGCASGA-

---RARGAW---

>gi|84361209|ref|ZP_00985887.1|	  707 residues, 50 /line  COG1530: Ribonucleases G and E [Burkholderia dolosa AUO158]

---MLFNAT-QQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEA CFVNYGEDRHGFLPFKEVARQY-FKE--

---GVD-MRS---ARIQDALREGQELIVQVEKEERG NKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG-DERQELRETM-AQLQIPDGM--SM IARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIR AIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIET AYSRTVPLPSGGAIVIDHTEALVAIDVNSARA--TKGADIEETATRTNLEAADEVARQLR LRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPA LSEGSHVTCPRCNGTGHIRDTESSALQVLR--IIQE -EAM KENTAAIHCQVPV--EVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH DDARLDDP-RASWKMAEEAARELESETGYSKRAA--DVKPK-QEAAVKGIT-PERP APSAAPQRPVEPVAAPAP-APVAAASGGFIGWLN-GLFGMSP---APAPA-P AAPAPAKEQASRPAR-ERAEKAEQRGETRR-RSQPA-IAACGA--QAGYKAAVDQ- -ACERPCGQAATPRKRERLRKRASRVTDAKV--VKAAKVAVSATDSNRA---

-SRVKAVTRANRARAASRVNRASEPSS- ---R >gi|145627603|ref|ZP_01783423.1|	  628 residues, 50 /line  ribonuclease, Rne/Rng family [Shewanella baltica OS185]

---MQRSAMFDDLY---LKK NDVIMKRMLINAT-QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEA AFVDYGADRHGFLPLKEIAREY-FPK--

---GYS-FQG--RPNIKEVVSEGQEVIVQIDKEERG NKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DERTELKEAM-ADLEVPAGM--GL IVRTAGVGKESAELKWDLKVLQHHWAAITEASQVKG--APFLIHQESNVIVR AIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIES AFQREVRLPSGGSIVIDPTEALTSIDINSARA--TKGGDIEETALNTNLEAADEIARQLR LRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPS LEESAAHICPRCHGQGTIRSTESLALSILR--LMEE -EAI KENTSQIEAIVPV--DVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHRS DDEISESSYKRIEQPEAKLYEPRKLERTAA--PI--PALKGFAAPQKV EQAPS-PTVKVEAP-QP--GFFSKLV-SAISAMF---APSEK-A EPVKVVETKTTDTSAANANR

-RNRRNDTRRPRNAQDADKAXE--

---G >gi|119469427|ref|ZP_01612366.1|	  564 residues, 50 /line  RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of [Alteromonadales bacterium TW-7]

MKRMLINAT-QQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEA AFVDYGADRHGFLPLKEIARTY-FPA--

---GYT-FNG--RPNIRDVIKEGQEVIIQVDKEERG QKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEG-DERTELKEAL-SRLELPKGM--GL IVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK--APFLIHQESNVIFR AIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIES AFQREVRLPSGGSIVIDPTEALTSIDINSSKA--TKGGDIEETALNTNLEAADEIARQLR LRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLEMSRQRLRPS LGEASQGVCPRCSGQGTVRSNESIALSILR--LIEE -EAI KDNTSQVNAQVPV--AVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETPHYEVMRLRK DETLETV--SYEQVVAPE--PEAFEMSKSP--AAPVR-EEPMLKGVVMPSSP

-APQAAPAPAAKPAAVAAKEEAGL LLHLLL--

---V >gi|52842507|ref|YP_096306.1|	  667 residues, 50 /line  ribonuclease E [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]

-MGL Y---MEKMLINAM-QTEEIRVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDA VFVEYGSKRQGFLPLKEIAPEY-LSK--

---NPE-EFGDEKPPITSLIREGQELLIQVDKEERG NKGAALTTFITLAGCYLVLMPNNPHSGGISRRIEG-DERDELRETL-NALTLPEDM--GL IIRTAGVGKSLEELQDDLNMLCNQWQSIKEAYNSEL--APCLIHQEGDVIIR SIRDNLRKSISEIIIDDQISYIKAKQYIERVKPEFLPNLKLYNSSIPLFNFYQIESQIET AYQRQVMLPSGGALVIDRTEALVSIDINSAKA--TGGADIEATALNTNLEAADEIARQLR LRDLGGLVVIDFIDMSSSKNQREVENRLKEALQADRARIQVGRISRFGLLEMSRQRLRLS LGETAQEICPRCEGRGTVRSIQSHGLSITR--LIEE -EAL KEKTAEIQVQLPP--EMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTITRLKE DNVGKSK--KPSYSLIQQ--PEVHVPSSDK--EPVSH-DEPAVKSFAEHRVI -KHPQT-SFIKRLWTSLFGGHS---VAHTV-T Q--EPGKKHHRAQNQGKHASSKSSGGDKRQQ-

-GSNANRRRRSGGGQQRSSSGNTNAAASTHQQRKKSNANQQSHGSQQSNRSIPAKNEGNK KREAIL-- -AKEPEE- ---K >gi|120575645|gb|EAX32269.1|	  720 residues, 50 /line  ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177']

MKRMLINAT-QPDEVRVAITDDSKLIDLDIEIPGQEHKKSNIYKGIITSIEPSLGA VFVNYGSERHGFLPLKEISREY-FLQ--

---DIEGDFD--SIDINRVLKLGQELVVQVDKEERG TKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEG-DERDQLRETI-NQLSLPEGM--GL IVRTAGLGRPKEELEWDLKILLRYWEAVKQAAVAKP--GPYLIHQESDVIIR AIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFSRFQIEQQIEN AHQREIRLPSGGSLIIDHSEALIAIDINSARA--TRGASIEETALSTNLEAAEEIARQLR IRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLLEMSRQRLRSS LTRSTQIACPRCNAEGTIRSIESLGLSIIH--IIQE -QAS KAKNIHFQLQAPV--DLATYLINEKRELLRDIEHHYPVKITIVPNQYMETPLYQLRQIKI DPASLEHGKGMASYKLTKVFKTEAPQKQEIRAL-SEPAIQQFL-TLP- PAPTTPRKTP-TP--GLFKRLMGKMFGSEE---EPSTAVT PPVKPHVPERHKPSSPPRGRRQGGYASRKS--TGPR ---RHHPRSGGGGGGHG--QNRHGARSR RGTRGGRRDHGGGRG--GPGYHTQST---GPMPPLGEDVV DVNQL-PMST---PPSPPPPFLTDADVPPSRDERRSGGINGDADHDA--KPH PNGKVSDDNRGN ---R >gi|124120794|gb|EAY39537.1|	  619 residues, 50 /line  ribonuclease E [Vibrio cholerae MZO-3]

---MLINAT-QKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEA AFVDYGAERHGFLPLKEIAREY-FPD--

---GYS-YQG--RPNIKDVLNEGQEVIVQIEKEERG SKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DERTELKSAL-SSLELPQGM--GL IVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNP--APFLIHQESNVIVR AIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIES AFQREVRLPSGGSIVIDPTEALTSIDINSARA--TKGGDIEETALNTNLEAADEIARQLR LRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMSRQRLSPS LAEASHHICPRCKGTGVIRDNESLALSVLR--LIEE -EAL KDNTSQVLAVVPV--SIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRE GEEQDVLSYLI-PKKLEAMKEAEGKEVVDVELKPKRI-EEPVLKGFAAPAEA VPAPT-PKPKAEPQPVAEVQQPAQP--GFFSRVFKAIASLFS---ETPE--A AKVEAPVTQNSEQDKPRRERND--RNNDRRRNPR--

--DKNRRR ---G >gi|77166294|ref|YP_344819.1|	  764 residues, 50 /line  Ribonuclease E and G [Nitrosococcus oceani ATCC 19707]

MKRMLINAT-HAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDA VFVDYGADRQGFLPLKEVTRSY-FQS--

---HQG-ESG-DRPKVQDVLKEGQELVVQVEKEERG NKGAALSTFISLAGRYLVLMPNNPRAGGVSRRIEG-EERSMLLEAM-RTLEIPEGM--GL ITRTAAVGKNAEELQWDLNYLLHLWHSIQAAAEGRP--APFLIYQESDVIIR ALRDYLRLDIGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIET AFQHEVALPSGGAIVVDYTEALTTIDINSARA--NKGEDIEETALSTNLEAAEEIARQLR LRDLGGLIVIDFIDMAPLRNQRAVENRLRECLREDRARVQVGRISRFGLLEMSRQRLRPS LGEAHQVVCPRCNGRGQVRGVESLGLSVLR--LIEE -GAA KEKTARMVIQLPI--SVASFLLNEKRANLAAIEKRYGAHLFLVPNSHLETPVFEIERIKD VGKGESRVDKRFEMQSYQMANEPSPK-KPALLTPSAIPDEPLVKAGS-PLFP KPEPQPVAPKAEP--DFLRRFWTAFMKGDQELDVAEVVTQETEV VSEETGERGRLPPRRG---RSQGRGRRGSGRQHNRKENTQGNEGSGV- ---SSGAESGQAASEAKETQDMQNG-TESSSAPSSRTTTRGRRGGRRR RVNATGRYRHRSGRKEEEETKRPE-EAQYPE-KDSL PSSTVLTTP---PAKSPLEETASDRKKAPSEEGREGLSQEPESPGPT--KVG VEREQAAAVKEPL---