At2g03390.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g03390-1vbvA0.pir.txt

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Assigned types to 330 residues in Sequence 2-03390, 0 remain unknown Assigned types to 77 residues in Sequence 1vbvA0, 253 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g03390-1vbvA0.pir.txt into sequence alignment.

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>1VBV.pdb Made from 603 ATOM records in 1VBV.pdb ASKFGIGQQVRHSLLGYLGVVVDIDPVAAPWYHVVMEDDNGLPVHTYLAE AQLSSELQDEHPEQPSMDELAQTIRKQ

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Best alignment: 1VBV.pdb    4  FGIGQQVRHSLLGYLGVVVDIDPVAA    29 F +GQ++RH  GY  VV  +DP+ + 2-03390   206  FRLGQKLRHKTFGYRAVVCGMDPICS   231

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Highlighted IDENTICAL residue PHE   6  index1    4  path  206  %Seq 100.00 Highlighted IDENTICAL residue GLY   9  index1    7  path  209  %Seq 100.00 Highlighted IDENTICAL residue GLN  10  index1    8  path  210  %Seq 100.00 Highlighted IDENTICAL residue ARG  13  index1   11  path  213  %Seq 100.00 Highlighted IDENTICAL residue HIS  14  index1   12  path  214  %Seq 100.00 Highlighted IDENTICAL residue GLY  18  index1   16  path  218  %Seq 100.00 Highlighted IDENTICAL residue TYR  19  index1   17  path  219  %Seq 100.00 Highlighted IDENTICAL residue VAL  22  index1   20  path  222  %Seq 100.00 Highlighted IDENTICAL residue VAL  23  index1   21  path  223  %Seq 100.00 Highlighted IDENTICAL residue ASP  27  index1   25  path  227  %Seq 100.00 Highlighted IDENTICAL residue PRO  28  index1   26  path  228  %Seq 100.00 Highlighted IDENTICAL residue ALA  49  index1   29  path  231  %Seq  50.00 Highlighted 12 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g03390-1vbvA0.pir.txt.1VBV.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g03390-1vbvA0.pir.txt PIR amino_acid 1VBV.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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