At2g07710.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g07710-c1ogyb_.pir.txt

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Assigned types to 150 residues in Sequence 2-07710, 6 remain unknown Assigned types to 126 residues in Sequence c1ogyb_, 30 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g07710-c1ogyb_.pir.txt into sequence alignment.

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>1OGY.pdb Made from 57824 ATOM records in 1OGY.pdb Error in function WYRM_fprintf_sequence_in_FASTA_format num_residues 7336 is outside bounds [ 0, 7000 ]

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Best alignment: 1OGY.pdb  393  DMVVTNPEHRA   403 D+VV +P H + 2-07710    78  DLVVESPHHHS    88

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Highlighted IDENTICAL residue GLU 411  index1  400  path   91  %Seq 100.00 Highlighted 1 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g07710-c1ogyb_.pir.txt.1OGY.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g07710-c1ogyb_.pir.txt PIR amino_acid 1OGY.pdb _ 100.0 BLOSUM62.dat

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@