At2g03740.1/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

=
=========================================

Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g03740-2ch7A0.pir.txt

=
=========================================

Assigned types to 189 residues in Sequence 2-03740, 8 remain unknown Assigned types to 309 residues in Sequence 2ch7A0, 42 remain unknown

=
=========================================

Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

=
=========================================

Translated sequence file At2g03740-2ch7A0.pir.txt into sequence alignment.

=
=========================================

>2CH7.pdb Made from 4630 ATOM records in 2CH7.pdb GSHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESIS ASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIE VTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIE AARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVS SEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVD EITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQM LKEIVARYKSHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNI STRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAG DALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNL LALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSI AEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAI EEQNAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ TIRENVQMLKEIVARYK

=
=========================================

Best alignment: 2CH7.pdb  157  AGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITAR   206 A +G    ++ + L + S++AS  V+   +E+ +++   G+       R 2-03740     51  AVKGAGNSPNDPKWLDDASEKASGYVKEKGSEVGNVSAQKGQELQNQMER   100

2CH7.pdb  207  VEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAI-EEQTAAVDEITTA   255 ++  +  +A E ++S+    +R ++ +      + EE T+  D+    2-03740    101  AKD--YIFGKAGEAMDSVAENAKRASDFVTEKGKEVKEETTSRTDKAKDF   148

2CH7.pdb  256  MTENAKNAEEITNSVKEVNAR   276 + E A + ++   ++   ++ 2-03740   149  IVEKAGDVKDTAMDMRNKTSK   169

=
=========================================

Highlighted IDENTICAL residue LEU 391  index1  171  path   71  %Seq 100.00 Highlighted IDENTICAL residue SER 395  index1  175  path   75  %Seq 100.00 Highlighted IDENTICAL residue ARG 404  index1  184  path   86  %Seq 100.00 Highlighted IDENTICAL residue ASN 407  index1  187  path   89  %Seq 100.00 Highlighted IDENTICAL residue VAL 419  index1  199  path  101  %Seq 100.00 Highlighted IDENTICAL residue GLU 429  index1  209  path  111  %Seq 100.00 Highlighted IDENTICAL residue GLU 436  index1  216  path  116  %Seq  50.00 Highlighted IDENTICAL residue ALA 437  index1  217  path  117  %Seq 100.00 Highlighted IDENTICAL residue ASN 442  index1  222  path  122  %Seq 100.00 Highlighted IDENTICAL residue VAL 448  index1  228  path  128  %Seq 100.00 Highlighted IDENTICAL residue GLU 449  index1  229  path  129  %Seq 100.00 Highlighted IDENTICAL residue ILE 451  index1  231  path  131  %Seq 100.00 Highlighted IDENTICAL residue GLU 453  index1  233  path  133  %Seq 100.00 Highlighted IDENTICAL residue ASN 457  index1  237  path  137  %Seq  50.00 Highlighted IDENTICAL residue ILE 458  index1  238  path  138  %Seq 100.00 Highlighted IDENTICAL residue ALA 461  index1  241  path  141  %Seq 100.00 Highlighted IDENTICAL residue ILE 462  index1  242  path  142  %Seq 100.00 Highlighted IDENTICAL residue THR 477  index1  257  path  158  %Seq  50.00 Highlighted IDENTICAL residue GLU 478  index1  258  path  159  %Seq 100.00 Highlighted 19 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g03740-2ch7A0.pir.txt.2CH7.pdb.conservation.pml

=
==================================================================

The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g03740-2ch7A0.pir.txt PIR amino_acid 2CH7.pdb _ 100.0 BLOSUM62.dat

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@