At2g01180.2/PDB

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g01180-2_2a96_A.pir.txt

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Assigned types to 327 residues in Sequence 2-01180-2, 0 remain unknown Assigned types to 137 residues in Sequence 2a96_A, 190 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g01180-2_2a96_A.pir.txt into sequence alignment.

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>2A96.pdb Made from 6960 ATOM records in 2A96.pdb QPFHSPEESVNSQFYLPPPPGNDDPAFRYDKEAYFKGYAIKGSPRWKQAA EDADISVENIARIFSPVVGAKISPKDTPETWNMLQNLLKVGGYYATASAK KYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHTAYSTLLALVLSQAR PERAQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQTIPAFQ KSLAKVREELNDKNNLLMQPFHSPEESVNSQFYLPPPPGNDDPAFRYDKE AYFKGYAIKGSPRWKQAAEDADISVENIARIFSPVVGAKISPKDTPETWN MLQNLLKVGGYYATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYP SGHTAYSTLLALVLSQARPERAQELARRGWEFGQSRVICGAHWQSDVDAG RYVGAVEFARLQTIPAFQKSLAKVREELNDKNNLLSQPFHSPEESVNSQF YLPPPPGNDDPAFRYDKEAYFKGYAIKGSPRWKQAAEDADISVENIARIF SPVVGAKISPKDTPETWNMLQNLLKVGGYYATASAKKYYMRTRPFVLFNH STCRPEDENTLRKDGSYPSGHTAYSTLLALVLSQARPERAQELARRGWEF GQSRVICGAHWQSDVDAGRYVGAVEFARLQTIPAFQKSLAKVREELNDKN NLLMQPFHSPEESVNSQFYLPPPPGNDDPAFRYDKEAYFKGYAIKGSPRW KQAAEDADISVENIARIFSPVVGAKISPKDTPETWNMLQNLLKVGGYYAT ASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHTAYSTLLALVL SQARPERAQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQTI PAFQKSLAKVREELNDKNNLLS

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Best alignment: 2A96.pdb   130  SYPSGHTAYSTLLALVLS   147 S+PSGHT++S   T L+L LS 2-01180-2   186  SFPSGHTSWSFAGLTFLSLYLS   207

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Highlighted IDENTICAL residue SER 153  index1  130  path  186  %Seq 100.00 Highlighted IDENTICAL residue PRO 155  index1  132  path  188  %Seq 100.00 Highlighted IDENTICAL residue SER 156  index1  133  path  189  %Seq 100.00 Highlighted IDENTICAL residue GLY 157  index1  134  path  190  %Seq 100.00 Highlighted IDENTICAL residue HIS 158  index1  135  path  191  %Seq 100.00 Highlighted IDENTICAL residue THR 159  index1  136  path  192  %Seq 100.00 Highlighted IDENTICAL residue SER 162  index1  139  path  195  %Seq 100.00 Highlighted IDENTICAL residue LEU 165  index1  142  path  202  %Seq 100.00 Highlighted IDENTICAL residue ALA 166  index1  143  path  203  %Seq 100.00 Highlighted 9 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g01180-2_2a96_A.pir.txt.2A96.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g01180-2_2a96_A.pir.txt PIR amino_acid 2A96.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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