At2g07360.1/PDB C-terminus

&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                        /usr/local/www/html/proteins/workspace/ generic_output                                       /usr/local/www/html/proteins/htdocs/results/

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Sequence file type = 3

Sequence type = 3

Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g07360-780-1196-2de0X.pir.txt

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Assigned types to 1196 residues in Sequence 2-07360, 119 remain unknown Assigned types to 457 residues in Sequence 2de0X, 858 remain unknown

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Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

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Translated sequence file At2g07360-780-1196-2de0X.pir.txt into sequence alignment.

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>2DE0.pdb Made from 3752 ATOM records in 2DE0.pdb LGKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLG HHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKA KKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWET VFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLA VPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEATKKLGFKH PVIGVHVRRTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPS LLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADF LVCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYA HQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI ETVKYPTYPE

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Best alignment: 2DE0.pdb  240  EEATKKLGFKHPVIGVHVRRTEAAFHPIEEYMVH   273 ++ + K    P+I + +RR E++F      ++H 2-07360   452  KDKSNKTKRPQPLIKLVMRRLESSFRSFSRPVLH   485

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Highlighted IDENTICAL residue GLU 347  index1  240  path  452  %Seq  50.00 Highlighted IDENTICAL residue GLU 348  index1  241  path  453  %Seq  50.00 Highlighted IDENTICAL residue ALA 349  index1  242  path  454  %Seq  50.00 Highlighted IDENTICAL residue THR 350  index1  243  path  455  %Seq  50.00 Highlighted IDENTICAL residue LYS 351  index1  244  path  456  %Seq  50.00 Highlighted IDENTICAL residue LYS 352  index1  245  path  457  %Seq  50.00 Highlighted IDENTICAL residue LEU 353  index1  246  path  458  %Seq  50.00 Highlighted IDENTICAL residue GLY 354  index1  247  path  459  %Seq  50.00 Highlighted IDENTICAL residue PHE 355  index1  248  path  460  %Seq  50.00 Highlighted IDENTICAL residue LYS 356  index1  249  path  461  %Seq  50.00 Highlighted IDENTICAL residue HIS 357  index1  250  path  462  %Seq  50.00 Highlighted IDENTICAL residue PRO 358  index1  251  path  463  %Seq  50.00 Highlighted IDENTICAL residue VAL 359  index1  252  path  464  %Seq  50.00 Highlighted IDENTICAL residue ILE 360  index1  253  path  465  %Seq  50.00 Highlighted IDENTICAL residue GLY 361  index1  254  path  466  %Seq  50.00 Highlighted IDENTICAL residue VAL 362  index1  255  path  467  %Seq  50.00 Highlighted IDENTICAL residue HIS 363  index1  256  path  468  %Seq  50.00 Highlighted IDENTICAL residue VAL 364  index1  257  path  469  %Seq  50.00 Highlighted IDENTICAL residue ARG 365  index1  258  path  470  %Seq  50.00 Highlighted IDENTICAL residue ARG 366  index1  259  path  471  %Seq  50.00 Highlighted IDENTICAL residue THR 367  index1  260  path  472  %Seq  50.00 Highlighted IDENTICAL residue GLU 373  index1  261  path  473  %Seq  50.00 Highlighted IDENTICAL residue ALA 374  index1  262  path  474  %Seq  50.00 Highlighted IDENTICAL residue ALA 375  index1  263  path  475  %Seq  50.00 Highlighted IDENTICAL residue PHE 376  index1  264  path  476  %Seq  50.00 Highlighted IDENTICAL residue HIS 377  index1  265  path  477  %Seq  50.00 Highlighted IDENTICAL residue PRO 378  index1  266  path  478  %Seq  50.00 Highlighted IDENTICAL residue ILE 379  index1  267  path  479  %Seq  50.00 Highlighted IDENTICAL residue GLU 380  index1  268  path  480  %Seq  50.00 Highlighted IDENTICAL residue GLU 381  index1  269  path  481  %Seq  50.00 Highlighted IDENTICAL residue TYR 382  index1  270  path  482  %Seq  50.00 Highlighted IDENTICAL residue MET 383  index1  271  path  483  %Seq  50.00 Highlighted IDENTICAL residue VAL 384  index1  272  path  484  %Seq  50.00 Highlighted IDENTICAL residue HIS 385  index1  273  path  485  %Seq  50.00 Highlighted 34 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g07360-780-1196-2de0X.pir.txt.2DE0.pdb.conservation.pml

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The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g07360-780-1196-2de0X.pir.txt PIR amino_acid 2DE0.pdb _ 100.0 BLOSUM62.dat

completed successfully.

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