In the plant Arabidopsis thaliana, At2g34650.1 is a gene model for the locus At2g34650.[1]
Also known as ABR, and PID, this gene model is classified by TAIR as "PID (PINOID); kinase". It is located on chr2, region 14597013-14598636 REVERSE.
Physiological function[]
At2g34650.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At2g34650.1/Expression
Subcellular localization[]
At2g34650.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At2g34650.1 has 438 amino-acid residues and a molecular weight Mw = 49.283 kDa.
The protein is relatively basic; at the physiological pH 7.4, its net charge is 12.89, or 0.029 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At2g34650.1/Knockout
Protein interactions[]
At2g34650.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At2g34650.1 has 1 recognized domains:
- Domain_0075_0394 Pkinase domain (PF00069, IPR000719) Description: Protein kinase;Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid phosphorylation (GO:0006468)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At2g34650.1
MLRESDGEMS
LGTTNSPISS
GTESCSSFSR
LSFDAPPSTI
PEEESFLSLK
PHRSSDFAYA
EIRRRKKQGL
TFRDFRLMRR
IGAGDIGTVY
LCRLAGDEEE
SRSSYFAMKV
VDKEALALKK
KMHRAEMEKT
ILKMLDHPFL
PTLYAEFEAS
HFSCIVMEYC
SGGDLHSLRH
RQPHRRFSLS
SARFYAAEVL
VALEYLHMLG
IIYRDLKPEN
ILVRSDGHIM
LSDFDLSLCS
DSIAAVESSS
SSPENQQLRS
PRRFTRLARL
FQRVLRSKKV
QTLEPTRLFV
AEPVTARSGS
FVGTHEYVAP
EVASGGSHGN
AVDWWAFGVF
LYEMIYGKTP
FVAPTNDVIL
RNIVKRQLSF
PTDSPATMFE
LHARNLISGL
LNKDPTKRLG
SRRGAAEVKV
HPFFKGLNFA
LIRTLTPPEI
PSSVVKKPMK
SATFSGRSSN
KPAAFDYF
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.