In the plant Arabidopsis thaliana, At1g05380.1 is a gene model for the locus At1g05380.[1]
This gene model is classified by TAIR as "DNA binding". It is located on chr1, region 1577230-1582189 FORWARD.
Physiological function[]
At1g05380.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At1g05380.1/Expression
Subcellular localization[]
At1g05380.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At1g05380.1 has 1138 amino-acid residues and a molecular weight Mw = 126.375 kDa.
The protein is relatively basic; at the physiological pH 7.4, its net charge is 15.55, or 0.014 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At1g05380.1/Knockout
Protein interactions[]
At1g05380.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At1g05380.1 has 1 recognized domains:
- Domain_0627_0670 PHD domain (PF00628, IPR001965) Description: Zinc finger, PHD-type;Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: zinc ion binding (GO:0008270)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At1g05380.1
MEGGGGSGER
SRIASNTPRS
LKEKSDGVGR
TVSSTETRQN
YQKRSRMVVS
DSESSDEFMK
PPPRRSGVDR
KTLGAKEKFV
RKRDRVEHDR
NGYVRRNNEA
SGSFMKMNKL
DIFEFDEYDG
FDSANLMRKR
FDNGSVGVRG
RSSFASRRVD
SSVGRSGSGR
EGLFDRRRNT
FVNGTCSASS
QEDSSSESDS
DEPMRVQGIN
GVLKVKVNNK
TNTLAASINP
RDAEIYERPP
SSRKAQRREN
VVVKPPFRKS
NNVDNNSESE
ESDMSRKSKR
KKSEYSKPKK
EFNTKSKSTF
PELVNPDVRE
ERRGRRGGGT
DKQRLRERIK
GMLTDAGWTI
DYKPRRNQSY
LDAVYVNPSG
TAYWSIIKAY
DALLKQLKDE
GVDARPRKDT
AAVASVSEEI
VNKLARKAKK
TRSEMTKKWK
QNSSGSDSEN
KSEGGAYTDT
SEERIRSSIK
LGGKSTKKGR
NGADWDELHK
KSKRSLYYNN
ARPSCGSDSH
YLHGRKTKKI
GRCTLLVRSS
KDKKNPAING
FNPYSGKRTL
LSWLIESGVV
QLRQKVQYMR
RRGAKVMLEG
WITREGIHCD
CCSKILTVSR
FEIHAGSKSC
QPFQNIYLES
GASLLQCQVR
AWNMQKDATN
LALHQVDTDG
DDPNDDACGI
CGDGGDLICC
DGCPSTYHQN
CLGMQVLPSG
DWHCPNCTCK
FCDAAVASGG
KDGNFISLLS
CGMCERRYHQ
LCLNDEAHKV
QSFGSASSFC
GPKCLELFEK
LQKYLGVKTE
IEGGYSWSLI
HRVDTDSDTN
SQMSAQRIEN
NSKLAVGLAI
MDECFLPIVD
RRSGVDLIRN
VLYNCGSNFN
RINYTGFYTA
ILERGDEIIS
AASLRFHGMQ
LAEMPFIGTR
HIYRRQGMCR
RLFDAIESAM
RSLKVEKLVI
PAIPDFLHAW
TGNFGFTPLD
DSVRKEMRSL
NTLVFPGIDM
LQKPLLHEEN
IIAPAAAGDA
MISEVETEKK
SEFTSSVEIG
PYAVEGDEFV
ADAANCYKDI
LASDEDNILV
SVETAMGTIC
KPKDELSRHF
RGEESGISSS
PCQITLKSGT
KHVLGHICDD
TGSSCEDGLT
DVNVEADASL
LSQEIQQASA
SFKVENNLSL
SISGRGSSDL
SSISQEVKSE
QTSSNLDGVP
SCKDYNILVP
GAKLDKSKDD
AFADGFLL
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.