In the plant Arabidopsis thaliana, At1g05690.1 is a gene model for the locus At1g05690.[1]
Also known as BT3, this gene model is classified by TAIR as "BT3 (BTB and TAZ domain protein 3); protein binding / transcription regulator". It is located on chr1, region 1707808-1709131 FORWARD.
Physiological function[]
At1g05690.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At1g05690.1/Expression
Subcellular localization[]
At1g05690.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At1g05690.1 has 364 amino-acid residues and a molecular weight Mw = 41.541 kDa.
The protein is relatively basic; at the physiological pH 7.4, its net charge is 15.99, or 0.044 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At1g05690.1/Knockout
Protein interactions[]
At1g05690.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At1g05690.1 has 2 recognized domains:
- Domain_0229_0321 zf-TAZ domain (PF02135, IPR000197) Description: Zinc finger, TAZ-type;Molecular Function: transcription cofactor activity (GO:0003712), Cellular Component: nucleus (GO:0005634), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: zinc ion binding (GO:0008270)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At1g05690.1
MSSSTKNIPK
PPPLPCITYQ
RFQSSTRKPS
SLMRLVPKEA
LETWDKLFKE
GSGADTYVET
DNKSHFPAHS
SVLAAASPVI
ATLLNQSRDK
NGNTYLKIHG
VPCEAVYMFI
RFLYSSCYEE
EEMKKFVLHL
LVLSHCYSVP
SLKRLCVEIL
DQGWINKENV
IDVLQLARNC
DVTRICFVCL
SMVIKDFKSV
SSTEGWKVMK
RSNPLLEQEL
IEAVIESDSR
KQERRRKLEE
REVYLQLYEA
MEALVHICRE
GCGTIGPRDK
ALKGSHTVCK
FPACKGLEGA
LRHFLGCKSR
ASCSHCKRMW
QLLQLHSCIC
DDSNSCKVSL
CWNFKEKMKK
LSKKEQSKWR
LLVENIIRAR
NSLGPFSSRS
SGLI
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.