In the plant Arabidopsis thaliana, At1g07320.4 is a gene model for the locus At1g07320.[1]
Also known as RPL4, this gene model is classified by TAIR as "RPL4 (ribosomal protein L4); structural constituent of ribosome". It is located on chr1, region 2249189-2250172 FORWARD.
Physiological function[]
At1g07320.4/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At1g07320.4/Expression
Subcellular localization[]
At1g07320.4/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At1g07320.4 has 278 amino-acid residues and a molecular weight Mw = 30.147 kDa.
The protein is relatively basic; at the physiological pH 7.4, its net charge is 5.33, or 0.019 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At1g07320.4/Knockout
Protein interactions[]
At1g07320.4/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At1g07320.4 has 1 recognized domains:
- Domain_0066_0260 Ribosomal_L4 domain (PF00573, IPR002136) Description: Ribosomal protein L4/L1e;Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At1g07320.4
MASSATAPNS
LSFFSSSLFL
SSSHQIPKTY
ISVSKLGSGR
VSKPLSVSSQ
LATLPILSFE
GEKVGETYLD
LKAAPEDTAR
AVVHRAIVTD
LNNKRRGTAS
TLTRGEVRGG
GIKPYSQKKT
GHARRGSQRT
PLRPGGGVVF
GPRPKDWSIK
INRKEKKLAI
STALSSAASA
EGGAIVVEEF
GEKFEKPKTK
DFLAAMQRWG
LDPKEKAMFL
MIDVDENVAK
SSRNIGTLRM
LTPRTLNLFD
ILNADKLVLT
PAAVEFLNAR
YGVDAVEEED
DDEDETEG
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.