At1g08510.1

In the plant Arabidopsis thaliana, At1g08510.1 is a gene model for the locus At1g08510.^[1]

Also known as FATB, this gene model is classified by TAIR as "FATB (FATTY ACYL-ACP THIOESTERASES B); acyl carrier/ acyl-ACP thioesterase". It is located on chr1, region 2691549-2693412 REVERSE.

Physiological function[]

At1g08510.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.

Tissue expression[]

At1g08510.1/Expression

Subcellular localization[]

At1g08510.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________

NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.

Biophysical properties[]

The gene model At1g08510.1 has 412 amino-acid residues and a molecular weight Mw = 45.691 kDa.

The protein is relatively neutral; at the physiological pH 7.4, its net charge is 4.11, or 0.010 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.

Knockout phenotype[]

At1g08510.1/Knockout

Protein interactions[]

At1g08510.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.

Domain structure[]

The gene model At1g08510.1 has 1 recognized domains:

Domain_0136_0401 Acyl-ACP_TE domain (PF01643, IPR002864) Description: Acyl-ACP thioesterase;Molecular Function: acyl carrier activity (GO:0000036), Biological Process: fatty acid biosynthesis (GO:0006633)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________

NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.

Amino-acid sequence[]

>At1g08510.1 MVATSATSSF FPVPSSSLDP NGKGNKIGST NLAGLNSAPN SGRMKVKPNA QAPPKINGKK VGLPGSVDIV RTDTETSSHP APRTFINQLP DWSMLLAAIT TIFLAAEKQW MMLDWKPRRS DMLVDPFGIG RIVQDGLVFR QNFSIRSYEI GADRSASIET VMNHLQETAL NHVKTAGLLG DGFGSTPEMF KKNLIWVVTR MQVVVDKYPT WGDVVEVDTW VSQSGKNGMR RDWLVRDCNT GETLTRASSV WVMMNKLTRR LSKIPEEVRG EIEPYFVNSD PVLAEDSRKL TKIDDKTADY VRSGLTPRWS DLDVNQHVNN VKYIGWILES APVGIMERQK LKSMTLEYRR ECGRDSVLQS LTAVTGCDIG NLATAGDVEC QHLLRLQDGA EVVRGRTEWS SKTPTTTWGT AP ________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP VLNVFLSHGISQIRSRY-