In the plant Arabidopsis thaliana, At1g27510.1 is a gene model for the locus At1g27510.[1]
This gene model is classified by TAIR as "similar to EX1 (EXECUTER1) [Arabidopsis thaliana] (TAIR:AT4G33630.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44852.1)". It is located on chr1, region 9554932-9558280 REVERSE.
Physiological function[]
At1g27510.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At1g27510.1/Expression
Subcellular localization[]
At1g27510.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At1g27510.1 has 651 amino-acid residues and a molecular weight Mw = 72.098 kDa.
The protein is relatively acidic; at the physiological pH 7.4, its net charge is -31.09, or -0.048 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At1g27510.1/Knockout
Protein interactions[]
At1g27510.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At1g27510.1 has no known domains._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At1g27510.1
MATTQPCLIG
QIIAVPQFHI
LFSPRNSLKP
ELSTNKRTNF
SVSIGLRHSF
ASSISTCNPK
APSLSCLRNC
AAVDGADTSS
SEDKWDWDWD
RWNRHFSEIE
EVESVVSLLK
SQLEDAVEKE
DFEEAVKLKQ
AISEATVDDA
VAEIMRQLQT
AVNEERYHDA
SRLCNETGSG
LVGWWVGLPR
DSEEPFGRIV
HITPGVGRFI
GKSYSPRQLV
AEAAGTPLFE
IFVIKDTDGG
YVMQVVYVQH
VKQNLTISEN
SFSKVQQSSK
SSINDPSILD
VRGSELKVDK
KEDTQLNAGE
PTEEGIKNVI
KFLKDKIPGL
KLKVMDVIKI
PEEEIVGSDD
ATEELVGEGT
EETNSSDDEE
EVEEEENDSI
EAISSMDSAD
YGKHSNTKLV
IGGVLHNIED
SSIDDEIVRV
SANIMDTERD
SFILHVPGRS
KRDIDTRKNR
VSKEQVTALA
AQGLSDLLPP
EVAEAFWGEK
ASLKVSKHVH
EIVKLAINQA
QKGNHLSEYT
AFNRIITPES
NLDPFDGLYV
GAFGPYGTEI
VQLKRKYGRW
DDAEGSNSSD
IEFFEYVEAV
KLTGDPNVPA
GQVTFRARIG
NGSRMTNHGL
FPEELGVLAS
YRGQGKIADF
GFKKPRWVEG
KLLKLNGKGM
GPYVKGADLG
FLYIGPEQSF
LVLFNRLRLP
E
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.